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View Structure Prediction Details

Protein: gi|18416086, gi|...
Organism: Arabidopsis thaliana
Length: 160 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18416086, gi|....

Description E-value Query
Range
Subject
Range
gi|18424850, gi|... - gi|18424850|ref|NP_568992.1| ribosomal protein L17 family protein [Arabidopsis thaliana], gi|1077380...
221.0 [0..1] [160..1]

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Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKFRKLGRP AGHRMSMLRT MVSQLVKHER IETTVTKAKE VRRLADNMIQ LGKEGSLSAA  60
   61 RRAAGFVRGD DVLHKIFTEL AHRYKDRAGG YTRLLRTRIR VGDAAPMAYI EFIDRENELR 120
  121 QSKPATPQPP QRVPLDPWER SRLTRQFAPP KEEKIPDSEL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.30103
Match: 1p85L
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.91574154879999 bayes_pls_golite062009
structural molecule activity 9.33953790706737 bayes_pls_golite062009
binding 0.790046242885262 bayes_pls_golite062009
protein binding 0.119824787909158 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle