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View Structure Prediction Details

Protein: gi|21436359, gi|...
Organism: Arabidopsis thaliana
Length: 236 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21436359, gi|....

Description E-value Query
Range
Subject
Range
gi|45435220, gi|... - gi|45440364|ref|NP_991903.1| elongation factor P [Yersinia pestis biovar Microtus str. 91001], gi|45...
281.0 [0..34] [235..9]

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Predicted Domain #1
Region A:
Residues: [1-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRAIFSVS CSSTPSLCIP YSTASFSSMN RLALPAVRIS PRTNRFPRIH CSMSANDIKA  60
   61 GTNIEVDGAP WRVLEFLHVK PGKGAAFVRT KIRNYVNGST VERTFRAGIS VEEANIYKET 120
  121 KQFTYKDGSQ FVFMDLTTYE ETRLNESDMG EKTKWLKEGM DCILLYWKDK VIDFDLPITV 180
  181 KLKVVDVDPG LRGDTVQGGS KPATMETGAI VAVPLFINVG EEIFVDTRTG AYMNRA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.0
Match: 1ybyA
Description: Conserved hypothetical protein Cth-95 from Clostridium thermocellum
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle