YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUB2_ARATH
Organism:	Arabidopsis thaliana
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUB2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|92887818 - gi\|92887818\|gb\|ABE89059.1\| conserved hypothetical protein [Medicago truncatula]	86.0	[0..10]	[64..12]
gi\|42554639, gi\|... - gi\|46126175\|ref\|XP_387641.1\| hypothetical protein FG07465.1 [Gibberella zeae PH-1], gi\|42554639\|gb\|E...	85.0	[0..1]	[58..1]
gi\|215708824, gi... - gi\|57863802\|gb\|AAS72370.2\| BLE1 protein [Oryza sativa Japonica Group], gi\|222630025\|gb\|EEE62157.1\| h... gi\|19912029 - gi\|19912029\|dbj\|BAB88326.1\| BLE1 protein [Oryza sativa]	81.0	[0..10]	[57..10]
gi\|38109390, gi\|... - gi\|39978085\|ref\|XP_370430.1\| predicted protein [Magnaporthe grisea 70-15], gb\|EAA55270.1\| hypothetic...	64.0	[0..21]	[58..30]
gi\|111062479, gi... - gi\|169612567\|ref\|XP_001799701.1\| hypothetical protein SNOG_09407 [Phaeosphaeria nodorum SN15], gi\|11...	61.0	[0..17]	[58..23]
gi\|134088773, gi... - gi\|50258440\|gb\|EAL21129.1\| hypothetical protein CNBD5050 [Cryptococcus neoformans var. neoformans B-... gi\|57226524, gi\|... - gi\|58266270\|ref\|XP_570291.1\| hypothetical protein CND01250 [Cryptococcus neoformans var. neoformans ...	50.0	[0..13]	[57..4]
gi\|116054938 - gi\|116054938\|emb\|CAL57015.1\| Permease of the major facilitator superfamily (ISS) [Ostreococcus tauri...	48.0	[0..5]	[51..605]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGGHGGGI TYKGVTVHTP KTWHTVTGKG LCAVMWFWIL YRAKQDGPVV MGWRHPWDGH  60
   61 GDHGHGDHH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits