YRC Public Data Repository - Protein Structure Prediction

Protein:	BRK1_ARATH
Organism:	Arabidopsis thaliana
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BRK1_ARATH.

Description	E-value	Query Range	Subject Range
BRK1_MAIZE - Protein BRICK1 OS=Zea mays GN=BRK1 PE=2 SV=1	148.0	[0..1]	[83..1]
gi\|92876897, gi\|... - gi\|92876897\|gb\|ABE84182.1\| conserved hypothetical protein [Medicago truncatula], gi\|163889370\|gb\|ABY...	143.0	[0..1]	[85..1]
BRK1_ORYSA - Probable protein BRICK1 - Oryza sativa (Rice) gi\|218191870 - gi\|218191870\|gb\|EEC74297.1\| hypothetical protein OsI_09549 [Oryza sativa Indica Group] BRK1_ORYSJ - Probable protein BRICK1 OS=Oryza sativa subsp. japonica GN=Os02g0829900 PE=3 SV=1	141.0	[0..1]	[83..1]
gi\|6841250 - gi\|6841250\|gb\|AAF28978.1\|AF161418_1 HSPC300 [Homo sapiens]	111.0	[0..17]	[78..16]
gi\|73984698 - gi\|73984698\|ref\|XP_850451.1\| PREDICTED: similar to chromosome 3 open reading frame 10 isoform 1 [Can...	111.0	[0..17]	[81..12]
gi\|194885999, gi... - gi\|194885999\|ref\|XP_001976528.1\| GG19964 [Drosophila erecta], gi\|190659715\|gb\|EDV56928.1\| GG19964 [D... gi\|194754371, gi... - gi\|194754371\|ref\|XP_001959469.1\| GF12040 [Drosophila ananassae], gi\|190620767\|gb\|EDV36291.1\| GF12040... gi\|195341788, gi... - gi\|195341788\|ref\|XP_002037487.1\| GM18284 [Drosophila sechellia], gi\|194132337\|gb\|EDW53905.1\| GM18284... gi\|194110413, gi... - gi\|195151261\|ref\|XP_002016566.1\| GL10432 [Drosophila persimilis], gi\|194110413\|gb\|EDW32456.1\| GL1043... gi\|194178847, gi... - gi\|195489457\|ref\|XP_002092746.1\| GE11496 [Drosophila yakuba], gi\|194178847\|gb\|EDW92458.1\| GE11496 [D... gi\|125808809\|ref... - GA15698-PA [Drosophila pseudoobscura], GA15698 [Drosophila pseudoobscura pseudoobscura] FBpp0310003, HSP... - This gene is referred to in FlyBase by the symbol Dmel\HSPC300 (CG30173, FBgn0061198). It is a prote... gi\|54636053, gi\|... - gi\|54636053\|gb\|EAL25456.1\| GA15698 [Drosophila pseudoobscura pseudoobscura], gi\|125808809\|ref\|XP_001...	110.0	[0..17]	[78..13]
gi\|170027871, gi... - gi\|170027871\|ref\|XP_001841820.1\| syntaxin Interacting protein 1 [Culex quinquefasciatus], gi\|1678682... gi\|108883083, gi... - gi\|157139855\|ref\|XP_001647599.1\| hypothetical protein AaeL_AAEL015617 [Aedes aegypti], gi\|157120249\|... AGAP007614-PA - chromosome 3 open reading frame 10\|protein_coding\|2L:48281024:48281346:-1\|gene:AGAP007614 gi\|55245298, gi\|... - gi\|58378117\|ref\|XP_308258.2\| AGAP007614-PA [Anopheles gambiae str. PEST], gi\|55245298\|gb\|EAA04587.2\|...	108.0	[0..17]	[78..12]
gi\|149728447 - gi\|149728447\|ref\|XP_001493938.1\| PREDICTED: similar to chromosome 3 open reading frame 10 [Equus cab... gi\|229367320, gi... - gi\|229368174\|gb\|ACQ59067.1\| Probable protein BRICK1 [Anoplopoma fimbria], gi\|229367320\|gb\|ACQ58640.1... gi\|76648501, gi\|... - gi\|76648501\|ref\|XP_591430.2\| PREDICTED: similar to chromosome 3 open reading frame 10 [Bos taurus], ... tr\|M3WEQ1\|M3WEQ1... - Uncharacterized protein OS=Felis catus GN=BRK1 PE=4 SV=1 gi\|73984700 - gi\|73984700\|ref\|XP_861492.1\| PREDICTED: similar to chromosome 3 open reading frame 10 isoform 2 [Can... BRK1_DANRE - Probable protein BRICK1 OS=Danio rerio GN=brk1 PE=3 SV=1 gi\|221220750, gi... - gi\|221222176\|gb\|ACM09749.1\| Probable protein BRICK1 [Salmo salar], gi\|221221378\|gb\|ACM09350.1\| Proba...	106.0	[0..17]	[78..12]
BRK1A_XENLA - Probable protein BRICK1-A OS=Xenopus laevis GN=brk1-a PE=3 SV=1	106.0	[0..17]	[78..12]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKAGGITNA VNVGIAVQAD WENREFISHI SLNVRRLFEF LVQFESTTKS KLASLNEKLD  60
   61 LLERRLEMLE VQVSTATANP SLFAT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.940	a.7.16	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits