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View Structure Prediction Details

Protein: MA652_ARATH
Organism: Arabidopsis thaliana
Length: 578 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MA652_ARATH.

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
236.0 [0..36] [525..1848]

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Predicted Domain #1
Region A:
Residues: [1-320]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTEAENPL LGEITCGTLL QKLQEIWDEV GESDEERDKL LLQIEEECLN VYKKKVELAA  60
   61 KSRAELLQTL SDATVELSNL TTALGEKSYI DIPDKTSGTI KEQLSAIAPA LEQLWQQKEE 120
  121 RVRAFSDVQS QIQKICEEIA GGLNNGPHVV DETDLSLKRL DDFQRKLQEL QKEKSDRLQK 180
  181 VLEFVSTVHD LCAVLRLDFL STVTEVHPSL DEANGVQTKS ISNETLARLA KTVLTLKEDK 240
  241 MQRLKKLQEL ATQLTDLWNL MDTSDEEREL FDHVTSNISA SVHEVTASGA LALDLIEQAE 300
  301 VEVDRLDQLK SSRMKEIAFK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [321-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQSELEEIYA RAHIEIKPEV VRERIMSLID AGNTEPTELL ADMDSQIAKA KEEAFSRKEI  60
   61 LDRVEKWMSA CEEESWLEDY NRDQNRYSAS RGA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.154902
Match: 2i1jA
Description: No description for 2i1jA was found.

Predicted Domain #3
Region A:
Residues: [414-578]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HLNLKRAEKA RILVSKITAM VDTLIAKTRA WEEENSMSFE YDGVPLLAML DEYTMLRQER  60
   61 EDEKRRLKEQ KKQQEQPHTD QESAFGSKPS PARPVSAKKP VGTRVNGGGL NETPMRRLSM 120
  121 NSNQNGSKSK RDSLNKIASP SNIVANTKDD AASPVSRADP VMASP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle