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View Structure Prediction Details

Protein: CRSH_ARATH
Organism: Arabidopsis thaliana
Length: 583 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRSH_ARATH.

Description E-value Query
Range
Subject
Range
gi|72162489, gi|... - gi|72162489|ref|YP_290146.1| RelA/SpoT protein [Thermobifida fusca YX], gi|71916221|gb|AAZ56123.1| R...
471.0 [0..3] [559..38]

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Predicted Domain #1
Region A:
Residues: [1-446]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVIRPSPIP IPRCRSQVLH RRLYSIQLIQ RRRRRWNPRS EVEDTAIEST ARSPEAAGGK  60
   61 MVVELVGAFN EVTERMNSVW LSTSSSRLLF KALKLSIPIL QSLPLASDGR SPLSKALSLS 120
  121 IILADLQMDA EVISASILSE VVDANAISIY EVRDHIGTGT AHLLHEIFRV KNIPFKVDVL 180
  181 DDETAASLRK FYLTYYDIRA VIMDLVSKLD EMRHLDHLPR YRQQILSLEV LKIYSPLAHA 240
  241 VGANHLSLEL EDISFRYLFP CSYIYLDSWL RGHENGSKPL IDVYKEQLHR SLKDDLVLAE 300
  301 MVNDVYIKGR YKSRYSMMKK LLRDGRKPEE VNDVLGLRVI LMPNSVVNDV EVGEKACYRT 360
  361 SEIIRSLWKE IPHRTKDYIA RPKENGYRSL HMAVDVSDSD QIRPLMEIQI RTMDMDGSAN 420
  421 AGTASHSLYK GGLTDPKEAK RLKAIM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 100.0
Match: 1vj7A
Description: Crystal structure of the bifunctional catalytic fragment of RelSeq, the RelA/SpoT homolog from Streptococcus equisimilis.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [447-583]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAAADLAAIR LKDISSNKHQ SFKTTTNQRD RVFCLLDKNG DGMISIEELM EVMEELGAPG  60
   61 EDAEEMMQLL DSNSDGSLSS DEFDTFQKQV EFMRKWEDRD NEYKSLLDEK LHDLPHQDTT 120
  121 GLIQLYNKEL EDRLSTH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.30103
Match: 2f33A
Description: No description for 2f33A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle