YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|79313225, gi\|...
Organism:	Arabidopsis thaliana
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|79313225, gi|....

Description	E-value	Query Range	Subject Range
gi\|45725013 - gi\|45725013\|emb\|CAG23918.1\| LIN1 protein [Cicer arietinum]	95.0	[0..1]	[147..1]
gi\|20521263, gi\|... - gi\|50901796\|ref\|XP_463331.1\| B1129G05.2 [Oryza sativa (japonica cultivar-group)], gi\|215768189\|dbj\|B...	91.0	[0..2]	[147..3]
gi\|45201176, gi\|... - gi\|45201176\|ref\|NP_986746.1\| AGR081Cp [Ashbya gossypii ATCC 10895], gi\|44985959\|gb\|AAS54570.1\| AGR08... gi\|44985959 - gi\|44985959\|gb\|AAS54570.1\| AGR081Cp [Ashbya gossypii ATCC 10895]	87.0	[0..28]	[146..5]
gi\|169601736, gi... - gi\|169601736\|ref\|XP_001794290.1\| hypothetical protein SNOG_03741 [Phaeosphaeria nodorum SN15], gi\|11...	86.0	[0..16]	[146..8]
gi\|55241846, gi\|... - gi\|58382507\|ref\|XP_311987.2\| ENSANGP00000011149 [Anopheles gambiae str. PEST], gi\|55241846\|gb\|EAA075...	78.0	[0..42]	[146..1]
gi\|39978267, gi\|... - gi\|39978267\|ref\|XP_370521.1\| predicted protein [Magnaporthe grisea 70-15], gb\|EAA55361.1\| hypothetic...	77.0	[0..1]	[146..1]
gi\|85693618, gi\|... - gi\|85712627\|ref\|ZP_01043674.1\| ribosomal protein L34 [Idiomarina baltica OS145], gi\|85693618\|gb\|EAQ3...	75.0	[0..87]	[147..5]
gi\|68355922 - gi\|68355922\|ref\|XP_691339.1\| PREDICTED: hypothetical protein [Danio rerio]	75.0	[0..29]	[146..2]
gi\|75828671, gi\|... - gi\|75828671\|ref\|ZP_00758029.1\| COG0230: Ribosomal protein L34 [Vibrio cholerae MO10], gi\|116188908\|r... gi\|116217467, gi... - gi\|75824160\|ref\|ZP_00753624.1\| COG0230: Ribosomal protein L34 [Vibrio cholerae RC385], gi\|116217467\|... gi\|75828140 - gi\|75828140\|ref\|ZP_00757575.1\| COG0230: Ribosomal protein L34 [Vibrio cholerae O395]	75.0	[0..92]	[146..20]
gi\|83372483, gi\|... - gi\|83372483\|ref\|ZP_00917263.1\| Ribosomal protein L34 [Rhodobacter sphaeroides ATCC 17029], gi\|833668...	73.0	[0..87]	[147..39]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKTLIRSG ASLMNRFLTK PTTNIVQNNL RSSFQYIAPQ GQEIPPYFFP SLSNLQSSLI  60
   61 SRPNDTASLQ ELNERGFLYP SGLPSLEFFL PEVDPSSEPL LLFPKRTFQP STIRRKRNHG 120
  121 FFARKATKGG RRVIARRIAK GRHRVTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.69897
Match:	3bbo4
Description:	No description for 3bbo4 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits