YRC Public Data Repository - Protein Structure Prediction

Protein:	AE7_ARATH
Organism:	Arabidopsis thaliana
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AE7_ARATH.

Description	E-value	Query Range	Subject Range
gi\|49900500, gi\|... - gi\|68364030\|ref\|XP_686385.1\| PREDICTED: hypothetical protein isoform 1 [Danio rerio], gi\|50539966\|re...	177.0	[0..3]	[156..5]
gi\|47224723 - gi\|47224723\|emb\|CAG00317.1\| unnamed protein product [Tetraodon nigroviridis]	175.0	[0..3]	[156..5]
gi\|114663046 - gi\|114663046\|ref\|XP_001160459.1\| PREDICTED: similar to CGI-128 protein isoform 2 [Pan troglodytes] ENSCJAT00000032289 - null	175.0	[0..5]	[156..8]
gi\|57870488 - gi\|57870488\|gb\|AAH89077.1\| LOC548360 protein [Xenopus tropicalis]	173.0	[0..3]	[154..4]
gi\|147901279, gi... - gi\|56540930\|gb\|AAH87289.1\| LOC496139 protein [Xenopus laevis], gi\|147901279\|ref\|NP_001088832.1\| hypo...	172.0	[0..3]	[156..5]
FAM96B - family with sequence similarity 96, member B	171.0	[0..5]	[156..12]
gi\|85861019 - gi\|85861019\|gb\|ABC86459.1\| IP05061p [Drosophila melanogaster]	171.0	[0..1]	[155..25]
gi\|73957533 - gi\|73957533\|ref\|XP_854044.1\| PREDICTED: similar to Hypothetical UPF0195 protein CGI-128 [Canis famil...	171.0	[0..5]	[156..156]
MIP18_MOUSE - Mitotic spindle-associated MMXD complex subunit MIP18 OS=Mus musculus GN=Fam96b PE=1 SV=1	170.0	[0..5]	[156..12]
gi\|109508323, gi... - ref\|XP_214626.1\| similar to Hypothetical protein CGI-128 homolog [Rattus norvegicus], gi\|221325680\|r...	170.0	[0..5]	[156..14]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSGLINENP IIYPKKERRL RTDTSITDEL TPEPIDQLEI FDHIRDIKDP EHPNTLEDLR  60
   61 VVTEDSVEVD DENSYVRVTF TPTVEHCSMA TVIGLCVRVK LLRSLPSRYK IDIRVAPGSH 120
  121 ATEDALNKQL NDKERVAAAL ENPNLVEMVD ECLPSEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.154902
Match:	1uwdA
Description:	Conserved Hypothetical Protein TM0487 from Thermotoga maritima
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits