YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|75174, gi\|60805
Organism:	Influenza A virus
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75174, gi|60805.

Description	E-value	Query Range	Subject Range
gi\|324027\|gb\|AAA... - nonstructural protein NS [Influenza A virus (A/FPV/Rostock/1934(H7N1))] gi\|324027 - gi\|324027\|gb\|AAA43115.1\| nonstructural protein NS [Influenza A virus (A/FPV/Rostock/1934(H7N1))] gi\|324027 - gi\|324027\|gb\|AAA43115.1\| nonstructural protein NS	217.0	[0..8]	[121..165]
gi\|94959961 - gi\|94959961\|gb\|ABF47809.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/12/1983(H1N1))] gi\|122852992 - gi\|122852992\|gb\|ABM66914.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/53/1983(H1N1))] gi\|109159518 - gi\|109159518\|gb\|ABG26841.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/13/1983(H1N1))] gi\|122852583 - gi\|122852583\|gb\|ABM66903.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/47/1983(H1N1))] gi\|94959980 - gi\|94959980\|gb\|ABF47820.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/15/1983(H1N1))] gi\|133752761 - gi\|133752761\|gb\|ABO37994.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/39/1983(H1N1))] gi\|94959942 - gi\|94959942\|gb\|ABF47798.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/8/1983(H1N1))] gi\|131059689 - gi\|131059689\|gb\|ABO33031.1\| nonstructural protein 2 [Influenza A virus (A/New Zealand/7/1983(H1N1))] NEP_I83A1 - Nuclear export protein OS=Influenza A virus (strain A/Chile/1/1983 H1N1) GN=NS PE=3 SV=1 gi\|94959923 - gi\|94959923\|gb\|ABF47787.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/7/1983(H1N1))] gi\|109159494 - gi\|109159494\|gb\|ABG26830.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/11/1983(H1N1))] gi\|94959904 - gi\|94959904\|gb\|ABF47776.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/4/1983(H1N1))] gi\|94959999 - gi\|94959999\|gb\|ABF47831.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/16/1983(H1N1))] gi\|112787613 - gi\|112787613\|gb\|ABI20865.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/14/1983(H1N1))] gi\|113170569 - gi\|113170569\|gb\|ABI30384.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/10/1983(H1N1))] gi\|94959885 - gi\|94959885\|gb\|ABF47765.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/3/1983(H1N1))] gi\|94960018 - gi\|94960018\|gb\|ABF47842.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/17/1983(H1N1))] gi\|94960037 - gi\|94960037\|gb\|ABF47853.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/18/1983(H1N1))] gi\|110629002 - gi\|110629002\|gb\|ABG79958.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/19/1983(H1N1))] gi\|75166 - gi\|75166\|pir\|\|MNIVC2 nonstructural protein NS2 - influenza A virus (strain A/ Chile/1/83 [H1N1]) gi\|145278858 - gi\|145278858\|gb\|ABP49355.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/1/1984(H1N1))] gi\|117571396 - gi\|117571396\|gb\|ABK40516.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/20/1983(H1N1))] gi\|117572215 - gi\|117572215\|gb\|ABK40552.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/24/1983(H1N1))] gi\|117572157 - gi\|117572157\|gb\|ABK40541.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/23/1983(H1N1))] gi\|117572722 - gi\|117572722\|gb\|ABK40574.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/28/1983(H1N1))] gi\|117572671 - gi\|117572671\|gb\|ABK40563.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/27/1983(H1N1))] gi\|117572778 - gi\|117572778\|gb\|ABK40596.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/30/1983(H1N1))] gi\|117572759 - gi\|117572759\|gb\|ABK40585.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/29/1983(H1N1))] gi\|118314268 - gi\|118314268\|gb\|ABK80042.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/22/1983(H1N1))] gi\|159149486 - gi\|159149486\|gb\|ABW91191.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/44/1983(H1N1))] gi\|118314214 - gi\|118314214\|gb\|ABK80031.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/21/1983(H1N1))] VNS2_IACHI, NEP_... - (P11619) Nonstructural protein NS2, (P11619) Nuclear export protein (NEP) (Non structural protein 2)... gi\|119365567 - gi\|119365567\|gb\|ABL67270.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/35/1983(H1N1))] gi\|119365548 - gi\|119365548\|gb\|ABL67259.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/25/1983(H1N1))] gi\|120434013 - gi\|120434013\|gb\|ABM22175.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/40/1983(H1N1))] gi\|120433994 - gi\|120433994\|gb\|ABM22164.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/38/1983(H1N1))] gi\|120434051 - gi\|120434051\|gb\|ABM22197.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/42/1983(H1N1))] gi\|120434032 - gi\|120434032\|gb\|ABM22186.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/41/1983(H1N1))] gi\|120434108 - gi\|120434108\|gb\|ABM22230.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/50/1983(H1N1))] gi\|120434089 - gi\|120434089\|gb\|ABM22219.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/48/1983(H1N1))] gi\|122852101 - gi\|122852101\|gb\|ABM66892.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/31/1983(H1N1))] gi\|120434127 - gi\|120434127\|gb\|ABM22241.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/51/1983(H1N1))]	216.0	[0..1]	[121..1]
NEP_I45A0 - Nuclear export protein OS=Influenza A virus (strain A/USA:Huston/AA/1945 H1N1) GN=NS PE=3 SV=1 gi\|89152224 - gi\|89152224\|gb\|ABD62848.1\| nonstructural protein 2 [Influenza A virus (A/Bel/1942(H1N1))] gi\|133752892 - gi\|133752892\|gb\|ABO38060.1\| nonstructural protein 2 [Influenza A virus (A/AA/Marton/1943(H1N1))] NEP_I43A0 - Nuclear export protein OS=Influenza A virus (strain A/USA:Iowa/1943 H1N1) GN=NS PE=3 SV=1 gi\|89152224\|gb\|A... - nonstructural protein 2 [Influenza A virus (A/Bel/42(H1N1))]	215.0	[0..1]	[121..1]
gi\|37926616 - gi\|37926616\|gb\|AAO46576.1\| non-structural protein NS2 [Influenza A virus (A/ElSalvador/2/57(H2N2))] gi\|37926616 - gi\|37926616\|gb\|AAO46576.1\| non-structural protein NS2 [Influenza A virus (A/ElSalvador/2/57(H2N2))]	215.0	[0..1]	[121..1]
gi\|125976172 - gi\|125976172\|gb\|ABN59407.1\| nonstructural protein 2 [Influenza A virus (A/Albany/4835/1948(H1N1))] gi\|158344920 - gi\|158344920\|gb\|ABW36317.1\| nonstructural protein 2 [Influenza A virus (A/Albany/8/1979(H1N1))] gi\|125663548 - gi\|125663548\|gb\|ABN50762.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/1/1979(H1N1))] gi\|125976229 - gi\|125976229\|gb\|ABN59440.1\| nonstructural protein 2 [Influenza A virus (A/Roma/1949(H1N1))] gi\|125976210 - gi\|125976210\|gb\|ABN59429.1\| nonstructural protein 2 [Influenza A virus (A/Arizona/14/1978(H1N1))] gi\|131059304 - gi\|131059304\|gb\|ABO32998.1\| nonstructural protein 2 [Influenza A virus (A/Lackland/7/1978(H1N1))] gi\|324840, gi\|75165 - gi\|75165\|pir\|\|MNIV2A nonstructural protein NS2 - influenza A virus (strain A/ USSR/90/77 [H1N1]), gi... gi\|131059066 - gi\|131059066\|gb\|ABO32987.1\| nonstructural protein 2 [Influenza A virus (A/Lackland/3/1978(H1N1))] NEP_I77AA - Nuclear export protein OS=Influenza A virus (strain A/Brazil/11/1978 H1N1) GN=NS PE=3 SV=1 gi\|89112442 - gi\|89112442\|gb\|ABD60939.1\| nonstructural protein 2 [Influenza A virus (A/USSR/92/77(H1N1))] NEP_I77AB - Nuclear export protein OS=Influenza A virus (strain A/USSR/90/1977 H1N1) GN=NS PE=3 SV=1 gi\|94959828 - gi\|94959828\|gb\|ABF47732.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/15/1978(H1N1))] gi\|94959847 - gi\|94959847\|gb\|ABF47743.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/17/1978(H1N1))] gi\|146133763 - gi\|146133763\|gb\|ABQ01328.1\| nonstructural protein 2 [Influenza A virus (A/USSR/46/1979(H1N1))] gi\|145279029 - gi\|145279029\|gb\|ABP49454.1\| nonstructural protein 2 [Influenza A virus (A/Albany/20/1978(H1N1))] NEP_IAUSS, VNS2_... - (P03504) Nonstructural protein NS2, (P03504) Nuclear export protein (NEP) (Non structural protein 2)... gi\|145278839 - gi\|145278839\|gb\|ABP49344.1\| nonstructural protein 2 [Influenza A virus (A/California/10/1978(H1N1))] gi\|109159439 - gi\|109159439\|gb\|ABG26819.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/1/1978(H1N1))] gi\|145278801 - gi\|145278801\|gb\|ABP49322.1\| nonstructural protein 2 [Influenza A virus (A/Albany/4836/1950(H1N1))] gi\|94959771 - gi\|94959771\|gb\|ABF47699.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/10/1978(H1N1))] gi\|94959790 - gi\|94959790\|gb\|ABF47710.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/11/1978(H1N1))] gi\|118313017 - gi\|118313017\|gb\|ABK79954.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/20/1978(H1N1))] gi\|94959809 - gi\|94959809\|gb\|ABF47721.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/13/1978(H1N1))]	215.0	[0..1]	[121..1]
NEP_IAWIL - (Q89733) Nuclear export protein (NEP) (Non structural protein 2) (NS2) gi\|541609 - gi\|541609\|gb\|AAA21583.1\| non-structural protein 2 [Influenza A virus (A/WS/1933(H1N1))] gi\|541606 - gi\|541606\|gb\|AAA21581.1\| non-structural protein 2 [Influenza A virus (A/WSN/1940(H1N1))] gi\|94960381 - gi\|94960381\|gb\|ABF47961.1\| nonstructural protein 2 [Influenza A virus (A/WSN/1933 TS61(H1N1))] NEP_I33A0 - Nuclear export protein OS=Influenza A virus (strain A/Wilson-Smith/1933 H1N1) GN=NS PE=1 SV=1 gi\|194352381 - gi\|194352381\|gb\|ACF54604.1\| nuclear export protein [Influenza A virus (A/WSN/1933(H1N1))] gi\|541606, gi\|541609 - gi\|541609\|gb\|AAA21583.1\| non-structural protein 2, gi\|541606\|gb\|AAA21581.1\| non-structural protein 2	215.0	[0..1]	[121..1]
gi\|148897961 - gi\|148897961\|gb\|ABR15814.1\| nonstructural protein 2 [Influenza A virus (A/Albany/13/1951(H1N1))] gi\|146760095 - gi\|146760095\|gb\|ABQ44477.1\| nonstructural protein 2 [Influenza A virus (A/Albany/14/1951(H1N1))] gi\|146133744 - gi\|146133744\|gb\|ABQ01317.1\| nonstructural protein 2 [Influenza A virus (A/Albany/1618/1951(H1N1))] NEP_I51A0 - Nuclear export protein OS=Influenza A virus (strain A/USA:Albany/12/1951 H1N1) GN=NS PE=3 SV=1 gi\|89114306 - gi\|89114306\|gb\|ABD61741.1\| nonstructural protein 2 [Influenza A virus (A/Fort Worth/50(H1N1))] gi\|89782564 - gi\|89782564\|gb\|ABD77824.1\| nonstructural protein 2 [Influenza A virus (A/Baylor/11735/82(H1N1))] gi\|90572592 - gi\|90572592\|gb\|ABD95345.1\| nonstructural protein 2 [Influenza A virus (A/Baylor/11515/82(H1N1))] NEP_I57A0 - Nuclear export protein OS=Influenza A virus (strain A/Japan/305/1957 H2N2) GN=NS PE=3 SV=1 gi\|188504360 - gi\|188504360\|gb\|ACD56297.1\| nonstructural protein 2 [Influenza A virus (A/Ann Arbor/23/1957(H2N2))] gi\|86793308 - gi\|86793308\|gb\|ABD15265.1\| nonstructural protein 2 [Influenza A virus (A/Denver/57(H1N1))] gi\|89112499 - gi\|89112499\|gb\|ABD60972.1\| nonstructural protein 2 [Influenza A virus (A/Malaysia/54(H1N1))] NEP_I60A0 - Nuclear export protein OS=Influenza A virus (strain A/Ann Arbor/6/1960 H2N2) GN=NS PE=3 SV=1 gi\|37926610 - gi\|37926610\|gb\|AAO46572.1\| non-structural protein NS2 [Influenza A virus (A/Davis/1/57(H2N2))] NEP_I57A1 - Nuclear export protein OS=Influenza A virus (strain A/Leningrad/134/1957 H2N2) GN=NS PE=3 SV=1 gi\|37926619 - gi\|37926619\|gb\|AAO46578.1\| non-structural protein NS2 [Influenza A virus (A/Malaya/16/58(H2N2))] gi\|94959866 - gi\|94959866\|gb\|ABF47754.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/7/1980(H1N1))] NEP_I57A0 - Nuclear export protein OS=Influenza A virus (strain A/Japan/305/1957 H2N2) GN=NS PE=3 SV=1 gi\|324861, gi\|32... - gi\|75164\|pir\|\|MNIV62 nonstructural protein NS2 - influenza A virus (strain A/Ann Arbor/6/60 [H2N2]),... gi\|145279010 - gi\|145279010\|gb\|ABP49443.1\| nonstructural protein 2 [Influenza A virus (A/Albany/24/1958(H2N2))] gi\|125663838 - gi\|125663838\|gb\|ABN50906.1\| nonstructural protein 2 [Influenza A virus (A/Memphis/49/1983(H1N1))] NEP_I54A2 - Nuclear export protein OS=Influenza A virus (strain A/Malaysia:Malaya/302/1954 H1N1) GN=NS PE=3 SV=1 gi\|134047456 - gi\|134047456\|gb\|ABO52264.1\| nonstructural protein 2 [Influenza A virus (A/Baylor/4052/1981(H1N1))] gi\|86793308 - gi\|86793308\|gb\|ABD15265.1\| nonstructural protein 2 [Influenza A virus (A/Denver/57(H1N1))] gi\|63054918 - gi\|63054918\|gb\|AAY28996.1\| non-structural protein NS2 [Influenza A virus (A/Canada/720/05(H2N2))] NEP_IALE1 - Nuclear export protein (NEP) (Non-structural protein 2) (NS2) - Influenza A virus (strain A/Leningra... NEP_I60A0, NEP_I... - (P21432) Nonstructural protein NS2, Nuclear export protein - Influenza A virus (strain A/Ann Arbor/6...	215.0	[0..1]	[121..1]
gi\|324760 - gi\|324760\|gb\|AAA43494.1\| nonstructural protein 2 [Influenza A virus (A/swine/1976/1931(H1N1))] gi\|324760 - gi\|324760\|gb\|AAA43494.1\| nonstructural protein 2	215.0	[0..1]	[121..1]
gi\|409714 - gi\|409714\|gb\|AAA91329.1\| nonstructural protein [Influenza A virus (A/NWS/1933(H1N1))] gi\|409714 - gi\|409714\|gb\|AAA91329.1\| nonstructural protein	215.0	[0..1]	[121..1]
gi\|324590, gi\|324593 - gi\|324593\|gb\|AAA19202.1\| nonstructural protein 2, gi\|324590\|gb\|AAA19200.1\| nonstructural protein 2 NEP_I57A2 - Nuclear export protein OS=Influenza A virus (strain A/Leningrad/134/17/1957 H2N2) GN=NS PE=3 SV=1 NEP_IALE2, VNS2_... - (P26133) Nonstructural protein NS2, (P69266) Nuclear export protein (NEP) (Non structural protein 2)... NEP_I57A3 - Nuclear export protein OS=Influenza A virus (strain A/Leningrad/134/47/1957 H2N2) GN=NS PE=3 SV=1 NEP_IALE3 - Nuclear export protein (NEP) (Non-structural protein 2) (NS2) - Influenza A virus (strain A/Leningra...	215.0	[0..1]	[121..1]

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Predicted Domain #1

Region A:
Residues: [1-54]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPNTVSSFQ DILLRMSKMQ LESSSGDLNG MITQFESLKL YRDSLGEAVM RMGD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [55-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LHSLQNRNEK WREQLGQKFE EIRWLIEEVR HKLKITENSF EQITFMQALH LLLEVEQEIR  60
   61 TFSFQLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.30103
Match:	1pd3A
Description:	Influenza A NEP M1-binding domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits