YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|79598781, gi\|...
Organism:	Arabidopsis thaliana
Length:	1024 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|79598781, gi|....

Description	E-value	Query Range	Subject Range
gi\|10177664 - gi\|10177664\|dbj\|BAB11126.1\| alpha-mannosidase [Arabidopsis thaliana]	964.0	[0..1]	[1024..1]
gi\|92886171 - gi\|92886171\|gb\|ABE88173.1\| Glycosyl hydrolases family 38 C-terminal domain, putative [Medicago trunc...	901.0	[0..6]	[1010..14]
gi\|113638749, gi... - gi\|222612422\|gb\|EEE50554.1\| hypothetical protein OsJ_30682 [Oryza sativa Japonica Group], gi\|1154810...	896.0	[0..25]	[1010..26]
gi\|197101359 - gi\|197101359\|ref\|NP_001127406.1\| mannosidase, alpha, class 2B, member 1 [Pongo abelii] gi\|55729221 - gi\|55729221\|emb\|CAH91346.1\| hypothetical protein [Pongo abelii]	889.0	[0..20]	[1014..47]
MA2B1_MACFA - Lysosomal alpha-mannosidase OS=Macaca fascicularis GN=MAN2B1 PE=2 SV=1	885.0	[0..22]	[1014..49]
gi\|3522867 - gi\|3522867\|gb\|AAC34130.1\| lysosomal alpha-mannosidase [Homo sapiens]	883.0	[0..22]	[1014..48]
MA2B1_BOVIN, M2B... - Lysosomal alpha-mannosidase OS=Bos taurus GN=MAN2B1 PE=1 SV=3, (Q29451) Lysosomal alpha-mannosidase ...	882.0	[0..11]	[1015..38]

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Predicted Domain #1

Region A:
Residues: [1-976]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLAKFLCWI VLLLGISLVE SRYMVYNTSH TIVPGKLNVH VVPHSHDDVG WLKTVDQYYV  60
   61 GSNNSIQVAC VQNVLDSIVP ALLADKNRKF IYVEQAFFQR WWNEQSEEIK RIVKELIHSG 120
  121 QLELINGGMC MHDEAAPHYI DMIDQTTLGH RFIIREFNVT PRIGWQIDPF GHSAVQAYLL 180
  181 GAEVGFDSVF FGRIDYQDRE KRYKEKTLEV IWRGSKSLGS SSQIFAGAFP TNYEPPPGGF 240
  241 YYEITDDSPV VQDDPDLFDY NVQERVNAFV AAALDQANIT RINHIMFTMG TDFRYQYAHT 300
  301 WYRQMDKLIH YVNLDGRVNA FYSTPSIYTD AKHAANEAWP LKTEDYFPYA DRINAYWTGY 360
  361 FTSRPALKRY VRVMSAYYLA ARQLEFFKGR SQKGPNTDSL ADALAIAQHH DAVSGTSKQH 420
  421 VANDYAKRLA IGYVEAESVV ATSLAHLTKV DPTLNPTFQQ CLLLNISYCP SSEVNLSDGK 480
  481 SLIVLAYNPL GWKRVDIVRL PVVGGDVSVH DSEGHEVESQ LVPFTDEYVA LRKYHVEAYL 540
  541 GQSPTQVPKY WLVFSVTVPP LGFTTYTIST AKKTDGYSSK SYVSNILKGE QSIINIGHGH 600
  601 LKLSFSTDQG TAINYVNGRT SMTEPVKQTF SYYSAYNGSN DKEPLIPQNS GAYVFRPNGT 660
  661 FPINPEGQVP LTVIHGPLVD EVHQQINPWI SQITRVYKGK EHVEVEFIVG NIPIDDGIGK 720
  721 EVVTQISSSL KSNKTFYTDS SGRDYIKRIR DYRSDWKLDV NQPIAGNYYP INHGIYLQDS 780
  781 KKEFSVMVDR AFGGSSIVDG QVELMLHRRL LLDDSRGVAE NLNETVCVQD KCTGLTIQGK 840
  841 YYYRIDPYGE GAKWRRTFGQ EIYSPLLLAF AQQDDGKPMS FGAASFSGID PSYSLPDNVA 900
  901 LLTLQELDDG NVLLRLAHLY EVEEDKELSG VASVELKKLF PGKKIGKLTE MSLSANQERS 960
  961 TMEKKRLVWK VEGEGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1ps3A
Description:	Golgi alpha-mannosidase II in complex with kifunensine
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [977-1024]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGEEKKAKRG REIDPRKLEM ELYPMEIRTV LIHLELPSSH SRINRFDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1o7dE
Description:	The structure of the bovine lysosomal a-mannosidase suggests a novel mechanism for low pH activation
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits