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View Structure Prediction Details

Protein: RECAM_ARATH
Organism: Arabidopsis thaliana
Length: 389 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RECAM_ARATH.

Description E-value Query
Range
Subject
Range
gi|25300508 - gi|25300508|pir||AE3350 recA protein [imported] - Brucella melitensis (strain 16M)
gi|17982728, gi|... - gi|17987070|ref|NP_539704.1| recombinase A [Brucella melitensis 16M], gi|17982728|gb|AAL51968.1| rec...
380.0 [0..61] [385..32]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRLSWASPI QRFRFFSYLS QLNGRRSVLA CSGYENRYLS SLVEASDCEL DEVPDDRKVA  60
   61 EKDTALHLAL SQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.39794
Match: 2q6tA
Description: No description for 2q6tA was found.

Predicted Domain #2
Region A:
Residues: [73-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSGDFDKDSK LSLQRFYRKR RVSVISTGSL NLDLALGVGG LPKGRMVEVY GKEASGKTTL  60
   61 ALHIIKEAQK LGGYCAYLDA ENAMDPSLAE SIGVNTEELL ISRPSSAEKM LNIVDVLTKS 120
  121 GSVDVIVVDS VAALAPQCEL DAPVGERYRD TQSRIMTQAL RKIHYSVGYS QTLIVFLNQV 180
  181 RSHVKSNMHF PHAEEVTCGG NALPFHAAIR LKMIRTGLIK TANKISGLNV CVQVVKNKLA 240
  241 PGKKKSELGI HFGHGFYVER EVLELACEHG VILREGTSYF IEGEVIEGKD AAEKYLVENK 300
  301 EALDTVVAIL RNQLFKM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 103.0
Match: 1ubcA
Description: RecA protein, ATPase-domain; RecA protein, C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle