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View Structure Prediction Details

Protein: PDI13_ARATH
Organism: Arabidopsis thaliana
Length: 579 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDI13_ARATH.

Description E-value Query
Range
Subject
Range
gi|114670980 - gi|114670980|ref|XP_001164327.1| PREDICTED: prolyl 4-hydroxylase, beta subunit isoform 5 [Pan troglo...
355.0 [0..94] [543..19]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSTSISL LLFVSFILLL VNSRAENASS GSDLDEELAF LAAEESKEQS HGGGSYHEEE  60
   61 HDHQHRDFEN YDDLEQGGGE F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.69897
Match: 2cugA
Description: Solution structure of the J domain of the pseudo DnaJ protein, mouse hypothetical mKIAA0962
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [82-579]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HHGDHGYEEE PLPPVDEKDV AVLTKDNFTE FVGNNSFAMV EFYAPWCGAC QALTPEYAAA  60
   61 ATELKGLAAL AKIDATEEGD LAQKYEIQGF PTVFLFVDGE MRKTYEGERT KDGIVTWLKK 120
  121 KASPSIHNIT TKEEAERVLS AEPKLVFGFL NSLVGSESEE LAAASRLEDD LSFYQTASPD 180
  181 IAKLFEIETQ VKRPALVLLK KEEEKLARFD GNFTKTAIAE FVSANKVPLV INFTREGASL 240
  241 IFESSVKNQL ILFAKANESE KHLPTLREVA KSFKGKFVFV YVQMDNEDYG EAVSGFFGVT 300
  301 GAAPKVLVYT GNEDMRKFIL DGELTVNNIK TLAEDFLADK LKPFYKSDPL PENNDGDVKV 360
  361 IVGNNFDEIV LDESKDVLLE IYAPWCGHCQ SFEPIYNKLG KYLKGIDSLV VAKMDGTSNE 420
  421 HPRAKADGFP TILFFPGGNK SFDPIAVDVD RTVVELYKFL KKHASIPFKL EKPATPEPVI 480
  481 STMKSDEKIE GDSSKDEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.522879
Match: 2b5eA
Description: Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle