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View Structure Prediction Details

Protein: NRL1_ARATH
Organism: Arabidopsis thaliana
Length: 346 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRL1_ARATH.

Description E-value Query
Range
Subject
Range
gi|16226740 - gi|16226740|gb|AAL16248.1|AF428318_1 AT3g44310/T10D17_100 [Arabidopsis thaliana]
341.0 [0..1] [346..1]

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Predicted Domain #1
Region A:
Residues: [1-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTKDMSTV QNATPFNGVA PSTTVRVTIV QSSTVYNDTP ATIDKAEKYI VEAASKGAEL  60
   61 VLFPEGFIGG YPRGFRFGLA VGVHNEEGRD EFRKYHASAI HVPGPEVARL ADVARKNHVY 120
  121 LVMGAIEKEG YTLYCTVLFF SPQGQFLGKH RKLMPTSLER CIWGQGDGST IPVYDTPIGK 180
  181 LGAAICWENR MPLYRTALYA KGIELYCAPT ADGSKEWQSS MLHIAIEGGC FVLSACQFCQ 240
  241 RKHFPDHPDY LFTDWYDDKE HDSIVSQGGS VIISPLGQVL AGPNFESEGL VTADIDLGDI 300
  301 ARAKLYFDSV GHYSRPDVLH LTVNEHPRKS VTFVTKVEKA EDDSNK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.39794
Match: 1j31A
Description: Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 2.08563993959019 bayes_pls_golite062009
catalytic activity 1.64442398754697 bayes_pls_golite062009
binding 1.15557693954948 bayes_pls_golite062009
protein binding 0.276768866737717 bayes_pls_golite062009
hydrolase activity 0.056614713418243 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle