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View Structure Prediction Details

Protein: gi|22135878, gi|...
Organism: Arabidopsis thaliana
Length: 451 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22135878, gi|....

Description E-value Query
Range
Subject
Range
gi|25406691, gi|... - gi|6503289|gb|AAF14665.1|AC011713_13 EST gb|AI997445 comes from this gene. [Arabidopsis thaliana], p...
278.0 [0..1] [451..1]

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Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLASSLVPH QWRLLTSPQL SLQAFIFSTA STTKSHTFWS PSLRQCRNLQ TALSPIVSSS  60
   61 YLPTSYITQK QIEIPTSPEK QSPP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [85-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VQEGLGAFQK LPMVMPSIDL YASALRKSKR VQPTKGIANI AKRERNRGAK QLDAFMKELA  60
   61 LPLKGYMESF PRKKLLHPYE RSLIDLTLGD GKYEEVLGKV DVLRKKVQSV GKEHASLCAK 120
  121 ALSKKEAEER LSEGVEKLEL VFQQQGGAVD DLLTIAKVLR AMPVVDLEMP TLCLVGAPNV 180
  181 GKSSLVRILS TGKPEICNYP FTTRGILMGH IVLNYQRFQV TDTPGLLRRC DEDRNNLEKL 240
  241 TLAVLTHLPT AVLYVHDLTG ECGTSPSDQF QIYKEMKERF KDYLWIDAVS KCDLLGGSPV 300
  301 MYAKEDRSSD DAEIIKYRER GPDESIHVSV KTEQGLNELK NKVKEVLSSE MEKIQSGEKT 360
  361 DQSVATC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.154902
Match: 2e87A
Description: No description for 2e87A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle