| Protein: | AP2L1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 345 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AP2L1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
230.0 | [0..11] | [345..1] |
|
|
215.0 | [0..18] | [323..166] |
|
|
212.0 | [0..9] | [314..207] |
|
Region A: Residues: [1-143] |
1 11 21 31 41 51
| | | | | |
1 MFIAVEVSPV MEDITRQSKK TSVENETGDD QSATSVVLKA KRKRRSQPRD APPQRSSVHR 60
61 GVTRHRWTGR YEAHLWDKNS WNETQTKKGR QVYLGAYDEE DAAARAYDLA ALKYWGRDTI 120
121 LNFPLCNYEE DIKEMESQSK EEY
|
| Detection Method: |  |
| Confidence: | 5.03 |
| Match: | 2gccA |
| Description: | SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [144-248] |
1 11 21 31 41 51
| | | | | |
1 IGSLRRKSSG FSRGVSKYRG VAKHHHNGRW EARIGRVFGN KYLYLGTYAT QEEAAIAYDI 60
61 AAIEYRGLNA VTNFDISRYL KLPVPENPID TANNLLESPH SDLSP
|
| Detection Method: | |
| Confidence: | 19.39794 |
| Match: | 1gccA |
| Description: | GCC-box binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [249-345] |
1 11 21 31 41 51
| | | | | |
1 FIKPNHESDL SQSQSSSEDN DDRKTKLLKS SPLVAEEVIG PSTPPEIAPP RRSFPEDIQT 60
61 YFGCQNSGKL TAEEDDVIFG DLDSFLTPDF YSELNDC
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.294 | a.60.8 | HRDC-like |
| View | Download | 0.283 | a.3.1 | Cytochrome c |
| View | Download | 0.283 | a.3.1 | Cytochrome c |
| View | Download | 0.236 | a.243.1 | Description not found. |
| View | Download | 0.218 | a.156.1 | S13-like H2TH domain |
| View | Download | 0.211 | d.51.1 | Eukaryotic type KH-domain (KH-domain type I) |
