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View Structure Prediction Details

Protein: TDT_ARATH
Organism: Arabidopsis thaliana
Length: 540 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TDT_ARATH.

Description E-value Query
Range
Subject
Range
gi|21536650 - gi|21536650|gb|AAM60982.1| sodium-dicarboxylate cotransporter-like [Arabidopsis thaliana]
289.0 [0..1] [540..1]

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Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGGDVTVAG SDDLKSPLLP VVHNDEPFER QTVGQQLRTI FTPKNCYIAL GPLLCAVVCL  60
   61 CVDLGGDETT TARNMLGVLV WMFAWWLTEA VPMPITSMTP LFLFPLFGIS AADDVANSYM 120
  121 DDVISLVLGS FILALAVEHY NIHRRLALNI TLVFCVEPLN APLLLLGICA TTAFVSMWMH 180
  181 NVAAAVMMMP VATGILQRLP SSSSTTEV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [209-347]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHPAVGKFSR AVVLGVIYSA AVGGMSTLTG TGVNLILVGM WKSYFPEADP ISFSQWFFFG  60
   61 FPLALCIFVV LWCVLCVMYC PKGAGQALSP YLHKSHLRRE LDLLGPMNFA EKMVLAVFGG 120
  121 LVVLWMTRNI TDDIPGWGR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [348-540]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFAGRAGDGT VSVMMATLLF IIPSNIKKGE KLMDWNKCKK LPWNIVLLLG AGFAIADGVR  60
   61 TSGLAEVLSK GLVFLETAPY WAIAPTVCLI AATITEFTSN NATTTLLVPL LIEIAKNMGI 120
  121 HPLLLMVPGA IGAQFAFLLP TGTPSNVVGF TTGHIEIKDM IKTGLPLKIA GTIFLSILMP 180
  181 TLGAYVFASM GGV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle