YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: UBP27_ARATH
Organism: Arabidopsis thaliana
Length: 494 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP27_ARATH.

Description E-value Query
Range
Subject
Range
gi|113426698 - gi|113426698|ref|XP_042698.4| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 22 (Ubiqui...
270.0 [0..10] [493..383]

Back

Predicted Domain #1
Region A:
Residues: [1-64]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSRRGSETK AIVCVLTDRI RISNQWVSHL SFAGLLGVAG FVFAQQHGLF RNLNNLKLFS  60
   61 GREK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [65-494]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSGDDSFLVP GLQNLGNNCF LNVILQALAS CKDFRSFLQW VLEDARGSLA GEQEEQLPLT  60
   61 FALSALLQEL GTVGSRRSVS NPRKVMVTLT DYAKNFNLTS QQDAAEALLH LISSLQEEIV 120
  121 VCYRPSQSSN LSDILFSRNL RMLAPSEGLH GLMELKRWHK HLRGPFDGIL GSTLMCRTCS 180
  181 SQISLEFQFF HTLPLSPLLH HGGYNIMSGC TLEHCLKKFL NTEKVENYFC YRCWHGAALK 240
  241 YLSVIGAAET EIEKLRSCGG EDQCDCKTSL HLQRMPWSNS YSHILKQLII ARFPKLLCIQ 300
  301 VQRASFNMFE EFKLSGHIAF PLVLNLSLFT PSSIGVNIEE RIEMSSEYQK PEASKNHGMY 360
  361 RLVTVVEHFG RTGSGHYTVY RSVRVFSQEE EEEDCDEDLS WFSISDSEVC RVSESDVLGA 420
  421 EASLLFYERL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.522879
Match: 2ibiA
Description: No description for 2ibiA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle