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View Structure Prediction Details

Protein: TBL18_ARATH
Organism: Arabidopsis thaliana
Length: 533 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TBL18_ARATH.

Description E-value Query
Range
Subject
Range
gi|7487578, gi|5... - pir||T10216 hypothetical protein T30C3.30 - Arabidopsis thaliana, gi|7269387|emb|CAB81347.1| putativ...
586.0 [0..1] [533..1]
gi|89276325 - gi|89276325|gb|ABD66519.1| unknown [Gymnadenia conopsea]
492.0 [0..3] [527..1]
gi|215769281, gi... - gi|50913263|ref|XP_468039.1| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi|46805...
482.0 [0..47] [530..220]

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Predicted Domain #1
Region A:
Residues: [1-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFGSPRNNS ILAAAGFPRK VSTVAIAIGG LASFFVFGLL LRLSYPNSSS VGGIFYGIGN  60
   61 PEQVHVPLSL SNHTVNILQK SSDINAFDKN LTSDSSSGLP VVVSKSIPPP DFSSDRKLET 120
  121 PLTQEKEDLV SSDITEKTDV QSGERETNVS KAEDTPSASS PPDDVSETAS AEPECDLYQG 180
  181 SWFYDPGGPL YTNNSCPVLT QMQNCQGNGR PDKGYENWRW KPSQCELPRF DARKFLELMK 240
  241 GKTLAFIGDS VARNQMESML CLLWQVETPV NRGSR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.13
Match: 2grxC
Description: No description for 2grxC was found.

Predicted Domain #2
Region A:
Residues: [276-345]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMQRWYFKQS SVMIARIWSS WLVHQFNEKF DYAPEGVTKL KLDLPDERIM EAIPKFDVVV  60
   61 LSSGHWFAKQ 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [346-533]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVYILKEEIV GGQLWWPDKS KPMKVNNVDA FGISVETILK SMATHPNYSG LTIVRTFSPD  60
   61 HYEGGAWNTG GSCTGKEEPI LPGKLVKNGF TEIMHEKQAT GYNQAVDKVA ENLKLKLKLM 120
  121 DITEAFGYRH DGHPGPFRSP DPNKITKRGP DGRPPPQDCL HWCMPGPVDT WNEMVLELIR 180
  181 RDRKSSST

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 86.102373
Match: PF03005.6
Description: No description for PF03005.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle