YRC Public Data Repository - Protein Structure Prediction

Protein:	ISOA3_ARATH
Organism:	Arabidopsis thaliana
Length:	764 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ISOA3_ARATH.

Description	E-value	Query Range	Subject Range
gi\|73698629 - gi\|73698629\|gb\|AAZ81837.1\| isoamylase isoform 3 [Pisum sativum]	570.0	[0..52]	[764..23]
gi\|25299809, gi\|... - gi\|7267544\|emb\|CAB78026.1\| isoamylase-like protein [Arabidopsis thaliana], pir\|\|B85091 isoamylase-li...	567.0	[0..77]	[764..1]
gi\|27728149 - gi\|27728149\|gb\|AAN15319.1\| isoamylase isoform 3 [Solanum tuberosum]	567.0	[0..36]	[764..36]
gi\|50900346, gi\|... - gi\|50900346\|ref\|XP_450961.1\| putative isoamylase-type starch debranching enzyme [Oryza sativa (japon...	564.0	[0..69]	[764..1]
gi\|58865274 - gi\|58865274\|dbj\|BAD89532.1\| isoamylase [Hordeum vulgare]	564.0	[0..57]	[764..65]
gi\|162458751, gi... - gi\|29126649\|gb\|AAO17049.2\| isoamylase-type starch debranching enzyme ISO3 [Zea mays], gi\|162458751\|r...	551.0	[0..82]	[764..11]
gi\|68245465, gi\|... - gi\|69260358\|ref\|ZP_00607993.1\| Glycoside hydrolase, family 77 [Magnetococcus sp. MC-1], gi\|68245465\|...	524.0	[0..84]	[764..7]
gi\|91778782, gi\|... - gi\|91778782\|ref\|YP_553990.1\| glycogen operon protein GlgX [Burkholderia xenovorans LB400], gi\|916914...	522.0	[0..84]	[764..10]
gi\|150960001, gi... - gi\|94414076\|ref\|ZP_01293941.1\| hypothetical protein PaerP_01004084 [Pseudomonas aeruginosa PA7], gi\|...	516.0	[0..80]	[764..7]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTSPSSSST YDPFSSNFSP SLTNAFSSSF TIPMGLKLSR RVTRARIFSR KIKDRSTLKV  60
   61 TCRRAHERVV EEEASTMTET KLFK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-764]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSSGEVSPLG VSQVDKGINF ALFSQNATSV TLCLSLSQSG KDDTDDDGMI ELVLDPSVNK  60
   61 TGDTWHICVE DLPLNNVLYG YRVDGPGEWQ QGHRFDRSIL LLDPYAKLVK GHSSFGDSSQ 120
  121 KFAQFYGTYD FESSPFDWGD DYKFPNIPEK DLVIYEMNVR AFTADESSGM DPAIGGSYLG 180
  181 FIEKIPHLQD LGINAVELLP VFEFDELELQ RRSNPRDHMV NTWGYSTVNF FAPMSRYASG 240
  241 EGDPIKASKE FKEMVKALHS AGIEVILDVV YNHTNEADDK YPYTTSFRGI DNKVYYMLDP 300
  301 NNQLLNFSGC GNTLNCNHPV VMELILDSLR HWVTEYHVDG FRFDLASVLC RATDGSPLSA 360
  361 PPLIRAIAKD SVLSRCKIIA EPWDCGGLYL VGKFPNWDRW AEWNGMYRDD VRRFIKGDSG 420
  421 MKGSFATRVS GSSDLYQVNQ RKPYHGVNFV IAHDGFTLRD LVSYNFKHNE ANGEGGNDGC 480
  481 NDNHSWNCGF EGETGDAHIK SLRTRQMKNF HLALMISQGT PMMLMGDEYG HTRYGNNNSY 540
  541 GHDTSLNNFQ WKELDAKKQN HFRFFSEVIK FRHSHHVLKH ENFLTQGEIT WHEDNWDNSE 600
  601 SKFLAFTLHD GIGGRDIYVA FNAHDYFVKA LIPQPPPGKQ WFRVADTNLE SPDDFVREGV 660
  661 AGVADTYNVA PFSSILLQSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.154902
Match:	1bf2A
Description:	STRUCTURE OF PSEUDOMONAS ISOAMYLASE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits