YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|26452952, gi\|...
Organism:	Arabidopsis thaliana
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26452952, gi|....

Description	E-value	Query Range	Subject Range
gi\|51964918, gi\|... - gi\|51964918\|ref\|XP_507243.1\| PREDICTED P0528B09.34 gene product [Oryza sativa (japonica cultivar-gro...	143.0	[0..14]	[111..25]
gi\|46138557, gi\|... - gi\|46138557\|ref\|XP_390969.1\| hypothetical protein FG10793.1 [Gibberella zeae PH-1], gi\|42552304\|gb\|E...	121.0	[0..21]	[112..25]
gi\|17380356, gi\|... - gi\|6691806\|emb\|CAB65851.1\| EG:BACR37P7.3 [Drosophila melanogaster], gi\|17380356\|sp\|P39205\|CIN_DROME ...	119.0	[0..22]	[96..8]
gi\|38110959, gi\|... - gi\|39977341\|ref\|XP_370058.1\| hypothetical protein MGG_06573 [Magnaporthe grisea 70-15], gb\|EAA56602....	115.0	[0..22]	[111..29]
gi\|44983189, gi\|... - gi\|45190293\|ref\|NP_984547.1\| AEL313Cp [Ashbya gossypii ATCC 10895], gi\|44983189\|gb\|AAS52371.1\| AEL31... gi\|44983189 - gi\|44983189\|gb\|AAS52371.1\| AEL313Cp [Ashbya gossypii ATCC 10895]	113.0	[0..22]	[108..21]
gi\|116203441, gi... - gi\|88175732\|gb\|EAQ83200.1\| hypothetical protein CHGG_09604 [Chaetomium globosum CBS 148.51], gi\|1162...	109.0	[0..22]	[102..34]
gi\|109020078 - gi\|109020078\|ref\|XP_001111945.1\| PREDICTED: similar to Molybdenum cofactor synthesis protein cinnamo...	107.0	[0..20]	[103..145]
gi\|49649364 - gi\|49649364\|emb\|CAG79074.1\| YALI0E03344p [Yarrowia lipolytica] gi\|49649364, gi\|... - gi\|50552041\|ref\|XP_503495.1\| YALI0E03344p [Yarrowia lipolytica], gi\|49649364\|emb\|CAG79074.1\| unnamed...	106.0	[0..21]	[111..26]
gi\|85094682 - gi\|85094682\|ref\|XP_959937.1\| hypothetical protein NCU02293 [Neurospora crassa OR74A] gi\|32421251, gi\|... - gi\|32421251\|ref\|XP_331069.1\| predicted protein [Neurospora crassa], gi\|28921394\|gb\|EAA30701.1\| predi...	106.0	[0..21]	[111..28]
gi\|114573247 - gi\|114573247\|ref\|XP_001152790.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]	105.0	[0..20]	[97..55]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALDTYASSN PNDVHEDVLL KARDACYKAR DAFYACLEKE SGKKPTEIAT VGLLYPKECS  60
   61 NSRTQFVNNC RSSWVKHFDR EYCRNKRVQR LLDDGDERKG PMSLPQPYTF KPSPST

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.48
Match:	1occH
Description:	Cytochrome c oxidase subunit h
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits