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View Structure Prediction Details

Protein: SYSM_ARATH
Organism: Arabidopsis thaliana
Length: 514 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYSM_ARATH.

Description E-value Query
Range
Subject
Range
gi|15221121 - gi|15221121|ref|NP_172651.1| SRS (SERYL-TRNA SYNTHETASE); serine-tRNA ligase [Arabidopsis thaliana]
482.0 [0..1] [514..1]

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Predicted Domain #1
Region A:
Residues: [1-514]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLHKLRLAA AVPVTFSSRL FLKPFTNTLT LGLFSRHLQP RNKPLLVRAF SASAAVQDIP  60
   61 ATQTSDSSVA ARPLWKAAID FKWIRDNKEA VEINIRNRNS NANLEAVLQL YENMVNLQKE 120
  121 VERLREERNN VAKKMKGKLE PSERERLVEE GKNLKESLVT LEEDLVKLKD ELQHVAQSIP 180
  181 NMTHPDVPVG GEDSSAIRQE VGSPREFSFP IKDHLQLGKD LDLIDFDSAA EVSGSKFFYL 240
  241 KNEAVLLEMA LLNWTLSQVM KKGYTPLTTP EIVRSSIVEK CGFQPRGDNT QVYSIDGTDQ 300
  301 CLIGTAEIPV GGIHMDSILL ESALPLKYIA FSHCFRTEAG AAGAATKGLY RVHQFSKAEM 360
  361 FVICQPEDSE SFHQELIQIE EDLFTSLGLH FKTLDMATAD LGAPAYRKFD IEAWMPGLGR 420
  421 FGEISSASNC TDYQSRRLGI RYRPSEPPQT GPKKGKANLP ATKFVHTLNA TACAVPRMMV 480
  481 CLLENYQQED GSVVIPEPLR PFMGGIELIK PKHK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.0
Match: 1wleA
Description: Crystal Structure of mammalian mitochondrial seryl-tRNA synthetase complexed with seryl-adenylate
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle