| Protein: | gi|22329629, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 604 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22329629, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
684.0 | [0..1] | [604..1] |
|
|
479.0 | [0..33] | [552..27] |
|
|
183.0 | [0..427] | [602..24] |
|
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182.0 | [0..404] | [602..2] |
|
Region A: Residues: [1-86] |
1 11 21 31 41 51
| | | | | |
1 MFGNVKDYGE TFQDSIFQTR NGSLSSTNQI GNPVTYKLVR VAGDGSLVPA TDEEMLEVKN 60
61 LLEKNEQDMP VLPDPIQTEE YIPDEG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.570 | d.327.1 | Description not found. |
| View | Download | 0.555 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.516 | d.58.19 | Bacterial exopeptidase dimerisation domain |
| View | Download | 0.502 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.460 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.403 | a.4.12 | TrpR-like |
| View | Download | 0.399 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.393 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.385 | d.58.25 | Killer toxin KP6 alpha-subunit |
|
Region A: Residues: [87-287] |
1 11 21 31 41 51
| | | | | |
1 SPSQFLQLEN FEGFFQSETA GPYTENLNSR HESKEELMNG SQMLFVLPDT KFQISTELSG 60
61 NVELVPSKVL LQEPILFSSN GCSINQSTDV LNATASPKEP ALSTAASKPD FSRVPGEISL 120
121 ANLSIKELQE TFRATFGRET TSKDKRWLKR RIKMGLINSC VVPTTTLTIN DSKLIGGDQD 180
181 AIDAFSKGTV DEETATESID T
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [288-433] |
1 11 21 31 41 51
| | | | | |
1 PASPDGIKGH SNDFGHSPVE TFVDHYSGNE DFEGEDGSAK RVRKPTRRYI EETNEKQQID 60
61 GSMIPSKDPS SIQAVSSEGR VVVTRMVSLA GSRIQVPYVS HVRRSRPREN IMALGEFRSK 120
121 SWEVKAAPEE GNLNLSPPQL SNDVNR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.524 | d.134.1 | Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 |
| View | Download | 0.493 | d.63.1 | mRNA triphosphatase CET1 |
| View | Download | 0.478 | b.60.1 | Lipocalins |
| View | Download | 0.465 | d.107.1 | Ran-binding protein mog1p |
| View | Download | 0.436 | b.60.1 | Lipocalins |
| View | Download | 0.436 | b.60.1 | Lipocalins |
| View | Download | 0.429 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.418 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.377 | b.60.1 | Lipocalins |
| View | Download | 0.333 | b.60.1 | Lipocalins |
|
Region A: Residues: [434-604] |
1 11 21 31 41 51
| | | | | |
1 VPGVKSASRC VQKESDKDHL KPIFTDVDQE MMEPELLDSS GDSSDDNFVD APITQSASGR 60
61 KLHRAWTISE VEKLVEGVSK YGVGKWTEIK KLSFSPYTHR TTVDLKDKWR NLQKASSSNR 120
121 MEGGLKKHGS MAIPTHIMLQ VRELAQKQSP ISRVVSKARV VKRSRSRNGF L
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| Detection Method: | |
| Confidence: | 42.221849 |
| Match: | 1h88C |
| Description: | c-Myb, DNA-binding domain |
Matching Structure (courtesy of the PDB): |
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