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View Structure Prediction Details

Protein: NILP1_ARATH
Organism: Arabidopsis thaliana
Length: 326 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NILP1_ARATH.

Description E-value Query
Range
Subject
Range
gi|18401429, gi|... - gi|222424030|dbj|BAH19976.1| AT2G27450 [Arabidopsis thaliana], gi|21554187|gb|AAM63266.1| putative n...
305.0 [0..1] [326..1]

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Predicted Domain #1
Region A:
Residues: [1-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METEGRRREV VVSSLQFACS DDISTNVAAA ERFVSLSSSL PLSNYQSLPS SSSFKFPYAL  60
   61 VREAHAKGAN IILIQELFEG YYFCQAQRED FFKRAKPYKN HPTIARMQKL AKELGVVIPV 120
  121 SFFEEANTAH YNSIAIIDAD GTDLGIYRKS HIPDGPGYQE KFYFNPGDTG FKVFQTKFAK 180
  181 IGVAICWDQW FPEAARAMVL QGAEILFYPT AIGSEPQDQG LDSRDHWRRV MQGHAGANVV 240
  241 PLVASNRIGK EIIETEHGPS QITFYGTSFI AGPTGEIVAE ADDKSEAVLV AQFDLDMIKS 300
  301 KRQSWGVFRD RRPDLYKVLL TMDGNL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.39794
Match: 1j31A
Description: Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.64442398754697 bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 1.35962310800332 bayes_pls_golite062009
N-carbamoylputrescine amidase activity 0.749539597459006 bayes_pls_golite062009
hydrolase activity 0.06604196264626 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle