YRC Public Data Repository - Protein Structure Prediction

Protein:	VDAC3_ARATH
Organism:	Arabidopsis thaliana
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VDAC3_ARATH.

Description	E-value	Query Range	Subject Range
gi\|5031279 - gi\|5031279\|gb\|AAD38145.1\|AF139498_1 porin [Prunus armeniaca]	336.0	[0..1]	[274..1]
gi\|67848430 - gi\|67848430\|gb\|AAY82249.1\| mitochrondrial voltage-dependent anion-selective channel [Phaseolus cocci...	331.0	[0..1]	[274..1]
gi\|36957170 - gi\|36957170\|gb\|AAQ87019.1\| VDAC1.1 [Lotus corniculatus var. japonicus]	330.0	[0..1]	[274..1]
gi\|7442952, gi\|1... - pir\|\|T09116 voltage-dependent anion channel protein - spinach, gi\|1256259\|gb\|AAA96275.1\| voltage-de...	328.0	[0..1]	[274..1]
VDAC1_SOLTU - Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2	324.0	[0..1]	[274..1]
gi\|7442953, gi\|1... - pir\|\|T12558 porin - common ice plant, gi\|1724100\|gb\|AAB38498.1\| porin [Mesembryanthemum crystallinum...	323.0	[0..1]	[274..1]
VDAC1_ORYSA - Outer mitochondrial membrane protein porin (Voltage-dependent anion-selective channel protein) (VDAC... VDAC1_ORYSJ - Mitochondrial outer membrane protein porin 1 OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3	322.0	[0..2]	[274..1]
gi\|5929928, gi\|1... - gi\|5929928\|gb\|AAD56651.1\|AF178950_1 voltage-dependent anion channel protein 1a [Zea mays], gi\|162460...	320.0	[0..2]	[274..1]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKGPGLYTE IGKKARDLLY RDYQGDQKFS VTTYSSTGVA ITTTGTNKGS LFLGDVATQV  60
   61 KNNNFTADVK VSTDSSLLTT LTFDEPAPGL KVIVQAKLP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.797	N/A	N/A	d.233.1	Inhibitor of vertebrate lysozyme, Ivy
View	Download	0.770	N/A	N/A	d.317.1	Description not found.
View	Download	0.766	N/A	N/A	d.24.1	Pili subunits
View	Download	0.758	N/A	N/A	d.233.1	Inhibitor of vertebrate lysozyme, Ivy
View	Download	0.758	N/A	N/A	d.233.1	Inhibitor of vertebrate lysozyme, Ivy
View	Download	0.756	N/A	N/A	d.129.3	Bet v1-like
View	Download	0.728	N/A	N/A	d.93.1	SH2 domain
View	Download	0.698	N/A	N/A	d.17.1	Cystatin/monellin
View	Download	0.695	N/A	N/A	d.93.1	SH2 domain

Predicted Domain #2

Region A:
Residues: [100-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DHKSGKAEVQ YFHDYAGIST SVGFTATPIV NFSGVVGTNG LSLGTDVAYN TESGNFKHFN  60
   61 AGFNFTKDDL TASLILNDKG EKLNASYYQI VSPSTVVGAE ISHNFTTKEN AITVGTQHAL 120
  121 DPLTTVKARV NNAGVANALI QHEWRPKSFF TVSGEVDSKA IDKSAKVGIA LALKP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits