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View Structure Prediction Details

Protein: gi|21436327, gi|...
Organism: Arabidopsis thaliana
Length: 413 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21436327, gi|....

Description E-value Query
Range
Subject
Range
gi|5821298 - gi|5821298|dbj|BAA83906.1| SRK13-b [Brassica oleracea]
542.0 [0..3] [411..14]

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Predicted Domain #1
Region A:
Residues: [1-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSIVLLPF ILILIPTFLS SVFAVSPLKT DTLKPGQQLR DWEQLISADG IFTLGFFTPK  60
   61 DSSTSELGSA GLRYLGIWPQ SIPINLVWVG NPTESVSDSS GSLSIDTNGV LKITQANAIP 120
  121 ILVNQRPAAQ LSLVGNVSAI LLDTGNFVVR EIRPGGVPGR VLWQSFDHPT NTLLPGMKIG 180
  181 FNLRTKKEVS VTSWITDQVP VPGAFRLGLD PSGANQLLVW RRGEIYWSSG ILTNNGSSHL 240
  241 NLEVSRHYID YEFKFDSNKY MKYFSYSIKK ANSSVFSSWF LDTLGQITVT FSLSSNNSST 300
  301 WISESS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.47
Match: 1dlpA
Description: Fetuin-binding protein Scafet precursor
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [307-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPCKTDLKNS SAICITEKPT ACRKGSEYFE PRRGYMMENN TGYYPFYYDD SLSAGLSDCH  60
   61 GTCWRNCSCI AFQAFPDGCQ YWEKGSKFVP YDSFNSNLVT YVLDSVK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle