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View Structure Prediction Details

Protein: SD25_ARATH
Organism: Arabidopsis thaliana
Length: 821 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for SD25_ARATH.

Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGVFIVIVT CLVFLPDPLR AGVASIGSIT PGFGGSQMNY INNDGIFLES NNSAFGFGFV  60
   61 TTQDSVTLFT LSIIHKSSTK LIWSANRASP 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [91-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSNSDKFVFD DNGNVVMEGT EVWRLDNSGK NASRIELRDS GNLVVVSVDG TSIWESFDHP  60
   61 TDTLITNQAF KEGMKLTSSP SSSNMTYALE IKSGDMVLSV NSLTPQVYWS MANARERIIN 120
  121 KDGGVVTSSS LLGNSWRFFD QKQVLLWQFV FSDNKDDNTT WIAVLGNNGV ISFSNLGSGA 180
  181 SAADSSTKIP SDLCGT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.154902
Match: 1dlpA
Description: Fetuin-binding protein Scafet precursor
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [287-394]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEPCGPYYVC SGSKVCGCVS GLSRARSDCK TGITSPCKKT KDNATLPLQL VSAGDGVDYF  60
   61 ALGYAPPFSK KTDLDSCKEF CHNNCSCLGL FFQNSSGNCF LFDYIGSF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [395-821]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTSGNGGSGF VSYIKIASTG SGGGDNGEDD GKHFPYVVII VVVTVFIIAV LIFVAFRIHK  60
   61 RKKMILEAPQ ESSEEDNFLE NLSGMPIRFA YKDLQSATNN FSVKLGQGGF GSVYEGTLPD 120
  121 GSRLAVKKLE GIGQGKKEFR AEVSIIGSIH HLHLVRLRGF CAEGAHRLLA YEFLSKGSLE 180
  181 RWIFRKKDGD VLLDWDTRFN IALGTAKGLA YLHEDCDARI VHCDIKPENI LLDDNFNAKV 240
  241 SDFGLAKLMT REQSHVFTTM RGTRGYLAPE WITNYAISEK SDVYSYGMVL LELIGGRKNY 300
  301 DPSETSEKCH FPSFAFKKME EGKLMDIVDG KMKNVDVTDE RVQRAMKTAL WCIQEDMQTR 360
  361 PSMSKVVQML EGVFPVVQPP SSSTMGSRLY SSFFKSISED GGATTSSGPS DCNSENYLSA 420
  421 VRLSGPR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.522879
Match: 2qkwB
Description: No description for 2qkwB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle