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View Structure Prediction Details

Protein: gi|18396599, gi|...
Organism: Arabidopsis thaliana
Length: 323 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18396599, gi|....

Description E-value Query
Range
Subject
Range
gi|21555509 - gi|21555509|gb|AAM63875.1| unknown [Arabidopsis thaliana]
451.0 [0..1] [323..1]

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Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASATLRRRL HHGDVDGRKY ERYDATDSET LSEPLLGSSS TDNSRNEYIE ERTLEDIWEE  60
   61 ERKRQQVHWT LIFSQLIAQW AQWIAKIVFG SGSLVGRFLS LPTFGQIGTG GRLLPPPLSM 120
  121 L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.391 N/A N/A d.162.1 LDH C-terminal domain-like
View Download 0.364 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.294 N/A N/A a.24.17 Group V grass pollen allergen
View Download 0.281 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.281 N/A N/A a.29.2 Bromodomain

Predicted Domain #2
Region A:
Residues: [122-323]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEERLRNIKR RIEIPFDGSR MEHQDALRQL WRLAYPQREL PPLKSELWKE MGWQGTDPST  60
   61 DFRGGGYISL ENLIFFAKTY PESFQRLLHK QDGTRAEWEY PFAVAGINIS FMLAQMLDLQ 120
  121 SGKPSTIAGI RFLGFLEEDE MAFDNLYCIA FQMMDAQWLA RRASYMEFND VLKSTRAQLE 180
  181 RELALDDVSS ITDLPAFNLL YK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 92.886057
Match: PF04727.4
Description: No description for PF04727.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle