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View Structure Prediction Details

Protein: gi|22331770, gi|...
Organism: Arabidopsis thaliana
Length: 247 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22331770, gi|....

Description E-value Query
Range
Subject
Range
gi|6729504, gi|1... - gi|6729504|emb|CAB67660.1| putative protein [Arabidopsis thaliana], pir||T45893 hypothetical protein...
184.0 [0..1] [247..1]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAGMFYCAS QASTATANGE RTVTARAIDR HNPIIKDGRR SFTAPCSSGD DYVAPYRQLS  60
   61 KITRVPSSSG DGKSVQVDKG RRS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.768 a.60.9 lambda integrase-like, N-terminal domain
View Download 0.641 a.64.1 Saposin
View Download 0.545 a.64.1 Saposin
View Download 0.541 a.4.5 "Winged helix" DNA-binding domain
View Download 0.540 a.64.1 Saposin

Predicted Domain #2
Region A:
Residues: [84-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSGSLMKLIS YDVSLARKSF GCVVATPKTP PGSTRYLLGS DPVSLAGSTG QDTVATEESE  60
   61 ASAPKRGSSG PVEEKKKSSG SGSDQVVVLR VSLHCHCRGC QGKVKKHLSK MQGVTSFNID 120
  121 FASKKVTVTG DITPLEVLGC LSKVKNAQFW TPPPPSIPRA NPET

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.39794
Match: 2ew9A
Description: No description for 2ew9A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle