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View Structure Prediction Details

Protein: gi|18417824, gi|...
Organism: Arabidopsis thaliana
Length: 269 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18417824, gi|....

Description E-value Query
Range
Subject
Range
gi|20093250, gi|... - gi|20093250|ref|NP_619325.1| dTDP-glucose 4,6-dehydratase [Methanosarcina acetivorans C2A], gi|19918...
188.0 [0..42] [268..1]

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Predicted Domain #1
Region A:
Residues: [1-269]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRSLIWKRS QAYSSVVTMS SISQRGNERL LSEVAGSHSR DNKILVLGGN GYVGSHICKE  60
   61 ALRQGFSVSS LSRSGRSSLH DSWVDDVTWH QGDLLSPDSL KPALEGITSV ISCVGGFGSN 120
  121 SQMVRINGTA NINAVKAAAE QGVKRFVYIS AADFGVINNL IRGYFEGKRA TEAEILDKFG 180
  181 NRGSVLRPGF IHGTRQVGSI KLPLSLIGAP LEMVLKLLPK EVTKIPVIGP LLIPPVNVKS 240
  241 VAATAVKAAV DPEFASGVID VYRILQHGH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.154902
Match: 1z7eA
Description: Crystal structure of full length ArnA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.26736023026862 bayes_pls_golite062009
oxidoreductase activity 0.68812524232244 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle