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View Structure Prediction Details

Protein: HDT1_ARATH
Organism: Arabidopsis thaliana
Length: 245 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HDT1_ARATH.

Description E-value Query
Range
Subject
Range
gi|2392769 - gi|2392769|gb|AAB70032.1| putative histone deacetylase [Arabidopsis thaliana]
202.0 [0..1] [244..1]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFWGIEVKS GKPVTVTPEE GILIHVSQAS LGECKNKKGE FVPLHVKVGN QNLVLGTLST  60
   61 ENIPQLFCDL VFDKEFELSH TWGKGSVYFV GYKTP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.41
Match: 2p1bA
Description: No description for 2p1bA was found.

Predicted Domain #2
Region A:
Residues: [96-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIEPQGYSEE EEEEEEEVPA GNAAKAVAKP KAKPAEVKPA VDDEEDESDS DGMDEDDSDG  60
   61 EDSEEEEPTP KKPASSKKRA NETTPKAPVS AKKAKVAVTP QKTDEKKKGG KAANQSPKSA 120
  121 SQVSCGSCKK TFNSGNALES HNKAKHAAAK 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.22
Match: 2j63A
Description: No description for 2j63A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle