| Protein: | LPAH2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 717 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LPAH2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
676.0 | [0..2] | [717..1] |
|
|
543.0 | [0..7] | [617..11] |
|
|
405.0 | [0..10] | [415..104] |
|
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389.0 | [0..10] | [453..104] |
|
|
362.0 | [0..8] | [450..159] |
|
|
351.0 | [0..69] | [407..8] |
|
Region A: Residues: [1-167] |
1 11 21 31 41 51
| | | | | |
1 MMTEATKVLY IVVREEGDDD DNNGDDSFRY TRPVLQSTLQ LMGCKARHAF KISRRVFELI 60
61 RSEGSCNTSP ENGKEPEFAK EVGGSTCVEK LNCLVVAGDV DKNKSKPFEM YKRRTTVVVS 120
121 REIFVDVVCD ALAEYKYVGR DQRADLILAC RIRERKESVT VLLCGTS
|
| Detection Method: |  |
| Confidence: | 3.39794 |
| Match: | 1j8mF |
| Description: | Signal sequence recognition protein Ffh; GTPase domain of the signal sequence recognition protein Ffh |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [168-259] |
1 11 21 31 41 51
| | | | | |
1 GCGKSTLSAL LGSRLGITTV VSTDSIRHMM RSFADEKQNP LLWASTYHAG EYLDPVAVAE 60
61 SKAKRKAKKL KGSRGVNSNA QKTDAGSNSS TT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.748 | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.748 | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.572 | c.9.1 | Barstar (barnase inhibitor) |
| View | Download | 0.569 | c.9.1 | Barstar (barnase inhibitor) |
| View | Download | 0.548 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.518 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.461 | a.7.14 | Description not found. |
| View | Download | 0.450 | a.1.1 | Globin-like |
| View | Download | 0.425 | a.1.1 | Globin-like |
| View | Download | 0.407 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.282 | a.130.1 | Chorismate mutase II |
|
Region A: Residues: [260-408] |
1 11 21 31 41 51
| | | | | |
1 ELLSHKQMAI EGYKAQSEMV IDSLDRLITT WEERNESVVV EGVHLSLNFV MGLMKKHPSI 60
61 VPFMVYIANE EKHLERFAVR AKYMTLDPAK NKYVKYIRNI RTIQDYLCKR ADKHLVPKIN 120
121 NTNVDKSVAT IHATVFGCLR RRETGEKLY
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.730 | N/A | N/A | a.29.6 | Description not found. |
| View | Download | 0.608 | N/A | N/A | d.6.1 | Prion-like |
| View | Download | 0.603 | N/A | N/A | d.159.1 | Metallo-dependent phosphatases |
| View | Download | 0.597 | N/A | N/A | d.218.1 | Nucleotidyltransferase |
| View | Download | 0.594 | N/A | N/A | a.216.1 | Description not found. |
| View | Download | 0.585 | N/A | N/A | c.57.1 | Molybdenum cofactor biosynthesis proteins |
| View | Download | 0.519 | N/A | N/A | c.10.1 | RNI-like |
| View | Download | 0.500 | N/A | N/A | c.30.1 | PreATP-grasp domain |
| View | Download | 0.436 | N/A | N/A | c.23.8 | N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) |
| View | Download | 0.371 | N/A | N/A | c.116.1 | alpha/beta knot |
| View | Download | 0.290 | N/A | N/A | d.118.1 | N-acetylmuramoyl-L-alanine amidase-like |
| View | Download | 0.279 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.273 | N/A | N/A | c.48.1 | TK C-terminal domain-like |
| View | Download | 0.252 | N/A | N/A | c.26.2 | Adenine nucleotide alpha hydrolases-like |
|
Region A: Residues: [409-528] |
1 11 21 31 41 51
| | | | | |
1 DTTTNTVSVI DDEHRNQCAA NSLTSKGMFQ VIQRQGSSRR FMALCNTDGT VAKTWPVASV 60
61 GKIRKPVVNT EMDDGTEHQL HKAEPVNLQF GHFGISAWPS DGATSHAGSV DDLRADIIET 120
121
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [529-717] |
1 11 21 31 41 51
| | | | | |
1 GSRHYSSCCS SPRTSDGPSK ELMEEQSVNG SDEDDEEGDD DFHEPDSDED LSDNNDERNR 60
61 DEIGSVDEES TKSDEEYDDL AMEDKSYWTD NEEEESRDTI SMVSQNNHNE ASKTNKDDKY 120
121 SQNLDLFLKT TNQPLTESLE LTSEYRNRMG VAASDKAKMR KRSLSIPPVG KHGSIIDDQI 180
181 LANQTDSVL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
