YRC Public Data Repository - Protein Structure Prediction

Protein:	ASHR3_ARATH
Organism:	Arabidopsis thaliana
Length:	497 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASHR3_ARATH.

Description	E-value	Query Range	Subject Range
gi\|2980780, gi\|2... - gi\|7269987\|emb\|CAB79804.1\| putative protein [Arabidopsis thaliana], gi\|2980780\|emb\|CAA18207.1\| putat...	436.0	[0..1]	[497..14]
gi\|94734197 - gi\|94734197\|emb\|CAK03606.1\| novel protein similar to vertebrate myeloid/lymphoid or mixed-lineage le...	297.0	[0..14]	[464..988]
NSD1_MOUSE - Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Mus musculus GN=Nsd1 P...	272.0	[0..110]	[496..1530]
gi\|109504622, gi... - gi\|109505410\|ref\|XP_001066409.1\| PREDICTED: similar to nuclear receptor binding SET domain protein 1...	271.0	[0..110]	[496..1630]
gi\|114603593 - gi\|114603593\|ref\|XP_001139281.1\| PREDICTED: similar to NSD1 isoform 3 [Pan troglodytes]	262.0	[0..110]	[470..1530]
gi\|73953269 - gi\|73953269\|ref\|XP_865744.1\| PREDICTED: similar to Histone-lysine N-methyltransferase, H3 lysine-36 ...	262.0	[0..110]	[470..1530]
NSD1 - nuclear receptor binding SET domain protein 1	261.0	[0..110]	[470..1632]
gi\|109079962 - gi\|109079962\|ref\|XP_001094467.1\| PREDICTED: similar to nuclear receptor binding SET domain protein 1...	260.0	[0..110]	[470..1276]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDLGNMSMS ASVALTCCPS FLPAASGPEL AKSINSPENL AGECNGKHLP MIPPEEEVKD  60
   61 IKIANGVTAF TRKQNPSDRV KKGFVLDDHV KDWVKRRVAS GVSESTCFLP FLVGAK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [117-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMVDCLVCHK PVYPGEDLSC SVRGCQGAYH SLCAKESLGF SKSSKFKCPQ HECFVCKQRT  60
   61 QWRCVKCPMA AHDKHSPW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.522879
Match:	1mm2A
Description:	Mi2-beta (CHD4)
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [195-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKEILHLKDQ PGRAVCWRHP TDWRLDTKHA VAQSEIEEVF CQLPLPYVEE EFKIDLAWKD  60
   61 SVVKEDPPSY VHIRRNIYLV KKKRDNANDG VGCTNCGPNC DRSCVCRVQC ISCSKGCSCP 120
  121 ESCGNRPFRK EKKIKIVKTE HCGWGVEAAE SINKEDFIVE YIGEVISDAQ CEQRLWDMKH 180
  181 KGMKDFYMCE IQKDFTIDAT FKGNASRFLN HSCNPNCVLE KWQVEGETRV GVFAARQIEA 240
  241 GEPLTYDYRF VQFGPEVKCN CGSENCQGYL GTKRKEPNCL VVSWGAKRRR LFHRPIARKP 300
  301 QQD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.09691
Match:	2igqA
Description:	No description for 2igqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits