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View Structure Prediction Details

Protein: ZDS_ARATH
Organism: Arabidopsis thaliana
Length: 558 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ZDS_ARATH.

Description E-value Query
Range
Subject
Range
gi|13991921 - gi|13991921|gb|AAK51557.1|AF372617_1 zeta-carotene desaturase precursor [Citrus x paradisi]
328.0 [0..1] [558..1]

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Predicted Domain #1
Region A:
Residues: [1-68]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSVVFAAT GSLSVPPLKS RRFYVNSSLD SDVSDMSVNA PKGLFPPEPV PYKGPKLKVA  60
   61 IIGAGLAG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.522879
Match: 1h7xA
Description: Dihydropyrimidine dehydrogenase, N-terminal domain; Dihydropyrimidine dehydrogenase, domain 4; Dihydropyrimidine dehydrogenase, domain 3; Dihydropyrimidine dehydrogenase, domain 2; Dihydropyrimidine dehydrogenase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [69-558]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTAVELLDQ GHEVDIYDSR TFIGGKVGSF VDRRGNHIEM GLHVFFGCYN NLFRLMKKVG  60
   61 AEKNLLVKDH THTFINKDGT IGELDFRFPV GAPIHGIRAF LVTNQLKPYD KLRNSLALAL 120
  121 SPVVKALVDP DGAMRDIRNL DSISFSDWFL SKGGTRASIQ RMWDPVAYAL GFIDCDNMSA 180
  181 RCMLTIFSLF ATKTEASLLR MLKGSPDVYL SGPIKQYITD RGGRIHLRWG CREILYDKSA 240
  241 DGETYVTGLA ISKATNKKIV KADVYVAACD VPGIKRLLPK EWRESRFFND IYELEGVPVV 300
  301 TVQLRYNGWV TELQDIELAR QLKRAVGLDN LLYTPDADFS CFADLALASP ADYYIEGQGT 360
  361 LLQCVLTPGD PYMRMPNDKI IEKVAMQVTE LFPSSRGLEV TWSSVVKIAQ SLYREAPGKD 420
  421 PFRPDQKTPI KNFFLAGSYT KQDYIDSMEG ATLSGRQASS YICDAGEELA ELNKKLSSSA 480
  481 TAVPDELSLV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.154902
Match: 2bxrA
Description: Human Monoamine Oxidase A in complex with Clorgyline, Crystal Forma A
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle