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View Structure Prediction Details

Protein: PME53_ARATH
Organism: Arabidopsis thaliana
Length: 383 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PME53_ARATH.

Description E-value Query
Range
Subject
Range
gi|6689892 - gi|6689892|gb|AAF23892.1|AF152172_1 pectin methyl esterase [Solanum tuberosum]
388.0 [0..12] [381..196]

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Predicted Domain #1
Region A:
Residues: [1-75]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKLNSTQAP NLFLLLLVIL LCSTQTQCHT KGLRLRPRNQ KNMNTTSDRT QNPEDEFMKW  60
   61 VRFVGSLKHS VFKAA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [76-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNKLFPSYTL TVHKKSNKGD FTKIQDAIDS LPLINFVRVV IKVHAGVYKE KVSIPPLKAF  60
   61 ITIEGEGAEK TTVEWGDTAQ TPDSKGNPMG TYNSASFAVN SPFFVAKNIT FRNTTPVPLP 120
  121 GAVGKQAVAL RVSADNAAFF GCRMLGAQDT LYDHLGRHYY KDCYIEGSVD FIFGNALSLY 180
  181 EGCHVHAIAD KLGAVTAQGR SSVLEDTGFS FVKCKVTGTG VLYLGRAWGP FSRVVFAYTY 240
  241 MDNIILPRGW YNWGDPSREM TVFYGQYKCT GAGANYGGRV AWARELTDEE AKPFLSLTFI 300
  301 DGSEWIKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.39794
Match: 1xg2A
Description: Crystal structure of the complex between pectin methylesterase and its inhibitor protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle