YRC Public Data Repository - Protein Structure Prediction

Protein:	DERL1_ARATH
Organism:	Arabidopsis thaliana
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DERL1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|50758070 - gi\|50758070\|ref\|XP_415746.1\| PREDICTED: similar to carcinoma related gene [Gallus gallus]	170.0	[0..4]	[235..127]
gi\|54639131, gi\|... - gi\|54639131\|gb\|EAL28533.1\| GA13336-PA [Drosophila pseudoobscura], gi\|125776769\|ref\|XP_001359387.1\| G...	167.0	[0..1]	[229..1]
gi\|46358911 - gi\|46358911\|gb\|AAS88720.1\| putative Der1-like family protein [Cynodon dactylon]	166.0	[0..1]	[264..1]
gi\|7269831, gi\|2... - gi\|7269831\|emb\|CAB79691.1\| putative protein [Arabidopsis thaliana], pir\|\|C85342 hypothetical protein...	161.0	[0..6]	[266..21]
gi\|72015515, gi\|... - gi\|72015515\|ref\|XP_786599.1\| PREDICTED: similar to Der1-like domain family, member 2 [Strongylocentr...	158.0	[0..1]	[232..3]
gi\|50933101, gi\|... - gi\|54287452\|gb\|AAV31196.1\| unknow protein [Oryza sativa Japonica Group], gi\|50933101\|ref\|XP_476078.1...	155.0	[0..1]	[220..1]
gi\|60678578 - gi\|60678578\|gb\|AAX33654.1\| Dbuz\CG14899-PA [Drosophila buzzatii]	153.0	[0..1]	[253..1]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPGEFYNS LPPITKAYGT LCFFTTVATQ LGLVAPVHIA LIPELVLKQF QIWRLITNLF  60
   61 FLGGFSINFG IRLLMIARYG VQLEKGPFER RTADFLWMMI FGSFTLLVLS VIPFFWTPFL 120
  121 GVSLVFMLLY LWSREFPNAN ISLYGLVTLK AFYLPWAMLA LDVIFGSPIM PDLLGIIAGH 180
  181 LYYFLTVLHP LATGKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.522879
Match:	2nr9A
Description:	No description for 2nr9A was found.

Predicted Domain #2

Region A:
Residues: [197-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLKTPKWVNK IVARWRIGAP VASVRQAGGV GAAGPGAGGG VGGGGAYSSA RAPPESSNTA  60
   61 FRGRSYRLTD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits