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View Structure Prediction Details

Protein: gi|20465349, gi|...
Organism: Arabidopsis thaliana
Length: 684 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20465349, gi|....

Description E-value Query
Range
Subject
Range
gi|9759158 - gi|9759158|dbj|BAB09714.1| unnamed protein product [Arabidopsis thaliana]
445.0 [0..1] [684..1]

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Predicted Domain #1
Region A:
Residues: [1-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIITTTTVR FTDGTSPTFF SSASTKAYNL HFLYSNSTQR LTNPKFGIGG KLKVTVNPYS  60
   61 YTEEVRPEER KSLTDFLTEA GDFVNSDGGD GGPPRWFSPL ECGARAPESP LLLYLPGIDG 120
  121 TGLGLIRQHK RLGEIFDIWC LHFPVKDRTP ARDIGKLIEK TVRSEHYRFP NRPIYIVGES 180
  181 IGASLALDVA ASNPDIDLVL ILANPVTRFT NLMLQPVLAL LEILPDGVPG LITENFGFYQ 240
  241 EMFETMLNEN DAAQMGRGLL GDFFATSSNL PTLIRIFPKD TLLWKLQLLK SASASANSQM 300
  301 DTVNAQTLIL LSGRDQWLMN KEDIERLRGA LPRCEVRELE NNGQFLFLED GVDLVSIIKR 360
  361 AYYYRRGKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.0
Match: 1cqzA
Description: Epoxide hydrolase, N-terminal domain; Mammalian epoxide hydrolase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.866238607554457 bayes_pls_golite062009
hydrolase activity 0.52702612560045 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [370-684]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDYISDYILP TPFEFKEYEE SQRLLTAVTS PVFLSTLKNG AVVRSLAGIP SEGPVLYVGN  60
   61 HMLLGMELHA IALHFLKERN ILLRGLAHPL MFTKKTGSKL PDMQLYDLFR IIGAVPVSGM 120
  121 NFYKLLRSKA HVALYPGGVR EALHRKGEEY KLFWPEHSEF VRIASKFGAK IIPFGVVGED 180
  181 DLCEMVLDYD DQMKIPFLKN LIEEITQDSV NLRNDEEGEL GKQDLHLPGI VPKIPGRFYA 240
  241 YFGKPIDTEG REKELNNKEK AHEVYLQVKS EVERCMNYLK IKRETDPYRN ILPRSLYYLT 300
  301 HGFSSQIPTF DLRNH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.23
Match: 1k30A
Description: Glycerol-3-phosphate (1)-acyltransferase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle