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View Structure Prediction Details

Protein: CHX23_ARATH
Organism: Arabidopsis thaliana
Length: 867 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CHX23_ARATH.

Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGAPLNVT NPNYDIEESR FGKIVCYDQS LLFEKREQKG WESGSTLASS LPFFITQLFV  60
   61 ANLSYRVLYY LTRPLYLPPF VAQILCGLLF SPSVLGNTR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-463]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FIIAHVFPYR FTMVLETFAN LALVYNIFLL GLGMDLRMVR ITELKPVIIA FTGLLVALPV  60
   61 GAFLYYLPGN GHPDKIISGC VFWSVALACT NFPDLARILA DLKLLRSDMG RTAMCAAIVT 120
  121 DLCTWVLLVF GFASFSKSGT WNKMMPFVII TTAIFVLLCI FVIRPGIAWI FAKTVKAGHV 180
  181 GDTHVWFILG GVVLCGLITD ACGVHSITGA FLFGLSIPHD HIIRNMIEEK LHDFLSGILM 240
  241 PLFYIICGLR ADIGFMLQFT DKFMMVVVIC SSFLVKIVTT VITSLFMHIP MRDAFAIGAL 300
  301 MNTKGTLSLV VLNAGRDTKA LDSPMYTHMT IALLVMSLVV EPLLAFAYKP KKKLAHYKHR 360
  361 TVQK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.69897
Match: 1zcdA
Description: Crystal structure of the Na+/H+ antiporter NhaA
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [464-600]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IKGETELRVL ACVHVLPNVS GITNLLQVSN ATKQSPLSVF AIHLVELTGR TTASLLIMND  60
   61 ECKPKANFSD RVRAESDQIA ETFEAMEVNN DAMTVQTITA VSPYATMHED ICVLAEDKRV 120
  121 CFIILPYHKH LTPDGRM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [601-867]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEGNSSHAEI NQNVLSHAPC SVGILVDRGM AMVRSESFRG ESMKREVAML FVGGPDDREA  60
   61 LSYAWRMVGQ HVIKLTVVRF VPGREALISS GKVAAEYERE KQVDDECIYE FNFKTMNDSS 120
  121 VKYIEKVVND GQDTIATIRE MEDNNSYDLY VVGRGYNSDS PVTAGLNDWS SSPELGTIGD 180
  181 TLASSNFTMH ASVLVIQQYS ATKRQAAVTA AAATTVMGAV AGVTGNNLES AGGDAKMTRD 240
  241 AHEPFMKSMY EDEDEDDEED HQYGIHR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.30103
Match: 2jaxA
Description: No description for 2jaxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle