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View Structure Prediction Details

Protein: LPR2_ARATH
Organism: Arabidopsis thaliana
Length: 581 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LPR2_ARATH.

Description E-value Query
Range
Subject
Range
gi|17064776 - gi|17064776|gb|AAL32542.1| spore coat protein-like protein [Arabidopsis thaliana]
341.0 [0..1] [581..1]

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Predicted Domain #1
Region A:
Residues: [1-581]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPSRRRMTR DMLLLIVTMA WLVTGDEGGI KQEERLFNLG KLEMFVDKLP HIPTLHGYHF  60
   61 VNGFLKPKSL HIGMFFKKWK FHRDLPATPV FAYGTSKRSA TVPGPTIEAV YGVDTYVTWR 120
  121 NHLPLHHILP WDPTISPAIP KHGGIPTVVH LHGGIHEPTS DGNADSWFTA GFKETGSKWT 180
  181 KKTTHYVNKQ QPGNMWYHDH AAGLTRVNLL AGLLGSYILR HSSVESPLRL PTGREFDRPL 240
  241 VIFDRSFRKD GSIYMNATGN NPTIHPQWQP EYFGDAIIVN GKAWPRLTVR RRKYRFRITN 300
  301 ASNARFFRFF FSNGLDFIVV GSDSAYLAKP VSTKSVLLAP SEIVDVLVDF SKSTSKTAIL 360
  361 ANNAPYPYPS GDPVTEENSK VMKFIINYKS EVDTSIIPKK LIEYPPAHVS TSTRTRYIAM 420
  421 FEYVSSIDEP THLYINGLPY NAPVTETPKI GTSEVWEVIN LTEDNHPLHI HLGLFKVLEQ 480
  481 TALVKSEEFI ECMTKRNDAV KCEISKYARG NKTAVTVHER GWKNVFKMMP GHVTKILVRF 540
  541 SYIHSNESYS FDATQEPGYV YHCHILDHED NMMMRPFAMV L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.221849
Match: 1gskA
Description: Spore coat protein A, CotA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.733511559778369 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle