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View Structure Prediction Details

Protein: CLS_ARATH
Organism: Arabidopsis thaliana
Length: 341 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLS_ARATH.

Description E-value Query
Range
Subject
Range
gi|21592612 - gi|21592612|gb|AAM64561.1| putative phosphatidylglycerotransferase [Arabidopsis thaliana]
333.0 [0..1] [341..1]

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Predicted Domain #1
Region A:
Residues: [1-128]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIYRSLRKL VEINHRKTRP FFTAATASGG TVSLTPPQFS PLFPHFSHRL SPLSKWFVPL  60
   61 NGPLFLSSPP WKLLQSATPL HWRGNGSVLK KVEALNLRLD RIRSRTRFPR QLGLQSVVPN 120
  121 ILTVDRND

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [129-341]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKEEDGGKLV KSFVNVPNMI SMARLVSGPV LWWMISNEMY SSAFLGLAVS GASDWLDGYV  60
   61 ARRMKINSVV GSYLDPLADK VLIGCVAVAM VQKDLLHPGL VGIVLLRDVA LVGGAVYLRA 120
  121 LNLDWKWKTW SDFFNLDGSS PQKVEPLFIS KVNTVFQLTL VAGAILQPEF GNPDTQTWIT 180
  181 YLSWLVASTT MASTAAYGVQ YWKKRPISMI KRS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 16.19382
Match: PF01066.12
Description: No description for PF01066.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle