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View Structure Prediction Details

Protein: SPSA1_ARATH
Organism: Arabidopsis thaliana
Length: 1043 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for SPSA1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNDWVNSY LEAILDVGQG LDDARSSPSL LLRERGRFTP SRYFVEEVIT GYDETDLHRS  60
   61 WVKAVATRSP QERNTRLENM CWRIWNLARQ KKQHEEKEAQ RLAKRRLERE KGRREATADM 120
  121 SEEFSEGEKG DIISDISTHG ESTKPRLPRI NSAESMELWA S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [162-677]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQKGNKLYLV LISLHGLIRG ENMELGRDSD TGGQVKYVVE LARALGSMPG VYRVDLLTRQ  60
   61 VSSPDVDYSY GEPTEMLTPR DSEDFSDEMG ESSGAYIVRI PFGPKDKYIP KELLWPHIPE 120
  121 FVDGAMSHIM QMSNVLGEQV GVGKPIWPSA IHGHYADAGD ATALLSGALN VPMLLTGHSL 180
  181 GRDKLEQLLR QGRLSKEEIN STYKIMRRIE GEELSLDVSE MVITSTRQEI DEQWRLYDGF 240
  241 DPILERKLRA RIKRNVSCYG RFMPRMVKIP PGMEFNHIVP HGGDMEDTDG NEEHPTSPDP 300
  301 PIWAEIMRFF SNSRKPMILA LARPDPKKNI TTLVKAFGEC RPLRELANLA LIMGNRDGID 360
  361 EMSSTSSSVL LSVLKLIDKY DLYGQVAYPK HHKQSDVPDI YRLAAKSKGV FINPAIIEPF 420
  421 GLTLIEAAAH GLPMVATKNG GPVDIHRVLD NGLLVDPHDQ QSISEALLKL VADKHLWAKC 480
  481 RQNGLKNIHQ FSWPEHCKTY LSRITSFKPR HPQWQS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.39794
Match: 2r60A
Description: No description for 2r60A was found.

Predicted Domain #3
Region A:
Residues: [678-762]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDGGDNSEPE SPSDSLRDIQ DISLNLKFSF DGSGNDNYMN QEGSSMDRKS KIEAAVQNWS  60
   61 KGKDSRKMGS LERSEVNSGK FPAVR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [763-1043]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRKFIVVIAL DFDGEEDTLE ATKRILDAVE KERAEGSVGF ILSTSLTISE VQSFLVSGGL  60
   61 NPNDFDAFIC NSGSDLHYTS LNNEDGPFVV DFYYHSHIEY RWGGEGLRKT LIRWASSLNE 120
  121 KKADNDEQIV TLAEHLSTDY CYTFTVKKPA AVPPVRELRK LLRIQALRCH VVYSQNGTRI 180
  181 NVIPVLASRI QALRYLFVRW GIDMAKMAVF VGESGDTDYE GLLGGLHKSV VLKGVSCSAC 240
  241 LHANRSYPLT DVISFESNNV VHASPDSDVR DALKKLELLK D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.69897
Match: 1s2oA
Description: X-Ray structure of the sucrose-phosphatase (SPP) from Synechocystis sp. PCC6803 at 1.40 A resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle