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View Structure Prediction Details

Protein: gi|17104687, gi|...
Organism: Arabidopsis thaliana
Length: 247 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17104687, gi|....

Description E-value Query
Range
Subject
Range
gi|4678259, gi|7... - pir||T06664 hypothetical protein F6I7.10 - Arabidopsis thaliana, gi|7269331|emb|CAB79390.1| putative...
147.0 [0..1] [247..696]

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Predicted Domain #1
Region A:
Residues: [1-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFVIPKLPF TLSLFLSLSF LIIFLFAFPT TFLRRPLSSS SSVTSVADEG IRIRHHGYSS  60
   61 YEAYIKHQLN KTQNPKLRKV WTTRDWDRKV RVFSTFFRRL SDRGLLSNQS KALSIGARVG 120
  121 QEVAALRLIG VEDSVGIDLV PRPPLVVKGD FHAQPFDEET FDFEFSNVFD HALYPEKFVG 180
  181 EIERTLKPGG VCVLHVSISG KTDKYSANDL LSVKPLVKLF KRSKVVEMRK IDGFGLDTEI 240
  241 VFRKNMN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 1qzzA
Description: Crystal structure of aclacinomycin-10-hydroxylase (RdmB) in complex with S-adensyl-L-methionine (SAM)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle