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View Structure Prediction Details

Protein: NIFU2_ARATH
Organism: Arabidopsis thaliana
Length: 235 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NIFU2_ARATH.

Description E-value Query
Range
Subject
Range
gi|8777425 - gi|8777425|dbj|BAA97015.1| unnamed protein product [Arabidopsis thaliana]
236.0 [0..1] [214..1]
gi|125576431, gi... - gi|77548999|gb|ABA91796.1| seven transmembrane protein Mlo4, putative [Oryza sativa (japonica cultiv...
203.0 [0..77] [235..562]
gi|74211556 - gi|74211556|dbj|BAE26508.1| unnamed protein product [Mus musculus]
203.0 [0..2] [166..82]
gi|34500319, gi|... - gi|34500319|gb|AAQ73784.1| NifU-like protein HIRIP5 [Homo sapiens], gi|194374137|dbj|BAG62381.1| unn...
198.0 [0..2] [166..84]
gi|55596270 - gi|55596270|ref|XP_525775.1| PREDICTED: similar to HIRA interacting protein 5 isoform 8 [Pan troglod...
198.0 [0..2] [166..84]

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Predicted Domain #1
Region A:
Residues: [1-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLLTLNPAA ISRTPPQAID PSSSSSLLLP FPQILSSQRA LGLVARPCNP LRRGLSRFLS  60
   61 SRQLFRRSKV VKAVATPDPI LEVPLTEENV ESVLDEIRPY LMSDGGNVAL HEIDGNIVRV 120
  121 KLQGACGSCP SSTMTMKMGI ERRLMEKIPE IVAVEAL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 1xhjA
Description: Solution Structure Of The Staphylococcus Epidermidis Protein SE0630. Northest Structural Genomics Consortium Target SeR8.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [158-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDEETGLELN EENIEKVLEE IRPYLIGTAD GSLDLVEIED PIVKIRITGP AAGVMTVRVA  60
   61 VTQKLREKIP SIAAVQLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.69897
Match: 1th5A
Description: Solution structure of C-terminal domain of NifU-like protein from Oryza sativa
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle