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View Structure Prediction Details

Protein: GES_ARATH
Organism: Arabidopsis thaliana
Length: 877 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GES_ARATH.

Description E-value Query
Range
Subject
Range
gi|29468412 - gi|29468412|gb|AAO85540.1| terpene synthase [Arabidopsis thaliana]
798.0 [0..1] [877..1]
TPSD1_PICAB - Bifunctional levopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-LAS PE=2 SV=1
724.0 [0..1] [782..92]
TPSD1_GINBI - Bifunctional levopimaradiene synthase, chloroplastic OS=Ginkgo biloba GN=LPS PE=1 SV=1
724.0 [0..2] [782..107]
TPSD1_PINTA - Bifunctional levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=1 SV=1
724.0 [0..6] [782..91]
TPSDV_ABIGR - Bifunctional abietadiene synthase, chloroplastic OS=Abies grandis GN=AS PE=1 SV=1
721.0 [0..1] [782..102]

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Predicted Domain #1
Region A:
Residues: [1-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSYGSSSN DLHAFVNEIK GEIQLSNINL DPYSFVSPSA YDTAWLSMIE EDINVDDNEL  60
   61 KPMFQGCLDW IMCNQNAREG FWMNSTSYTT VADGRDEDGE KDMCILTSTL ACVVALQKWN 120
  121 IGCFHLHKGT RYIERNTEMI IGKYINEEGS YPRWFAIKFT GILELAQKLG LHFVFSSRCI 180
  181 EMIKGMFYQR QEIIQREKLV 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [201-784]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDCNYKPLLA YLEVLPSKLY VTNQEDIIVK SLDSMDGSLF QSPSATASAF MLTRNTKCLA  60
   61 YLQNLVQKCP NGVPQKYPLN EDLIKLSMVN LIESTGLGEF FGIEIEHVLE QVYSRYEEKD 120
  121 FERMPMSYLA DQLHKDSLAF RMLRMHGRDV SPRSFCWFLN DQETRNHLER NIDSFLLVIL 180
  181 SVYRATDLMF PGEHDLQEAR EYTRNLLEKR RSIKEKMIMH ELSTPWIARL KHLDHRMWIE 240
  241 DKNSNVLSME KASFLRLHSS YSDKLTHLAA RNFEFQQAKY CRELEELTMW VKKWGLSDIG 300
  301 FGREKTTYCY FATVTSLPYE YAIKFGKLAA KTAILITIAD DFFDEKGSFN DLEGLTKAVL 360
  361 RWEGEELKSY GNIIFRALDD IVRETANTCR THHKTDIIVH LRNIWGETFE SWLREAEWSK 420
  421 KGHTSSMDEY IRNGMISIAA HTIALSISCL MEPCFPHNKL KPGNYDSITT LLMIIPRLLN 480
  481 DLQSYQKEQE QGKMNSVLLH MKNHPGLEIE DSIAHIEKII DSKRKEFLEH VLVDGLSDLP 540
  541 KPCKEIHMSC CKVFEMFFNK KNRYDSNTEM LHDIKKALYD PINV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 150.0
Match: 5eauA
Description: 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [785-877]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YELSEMEPMP LMAHGDEYMI LPLLLNSLPN ILEFKRKDGY GAMKTSMCFG RSYRVNKRVM  60
   61 ASQLDDQHKP LKIVASQRKP VPMMQSIFAP CFY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle