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View Structure Prediction Details

Protein: SUF4_ARATH
Organism: Arabidopsis thaliana
Length: 367 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUF4_ARATH.

Description E-value Query
Range
Subject
Range
gi|21553740 - gi|21553740|gb|AAM62833.1| putative zinc finger protein [Arabidopsis thaliana]
163.0 [0..1] [367..1]

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Predicted Domain #1
Region A:
Residues: [1-108]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKKKRATE KVWCYYCDRE FDDEKILVQH QKAKHFKCHV CHKKLSTASG MVIHVLQVHK  60
   61 ENVTKVPNAK DGRDSTDIEI YGMQGIPPHV LTAHYGEEED EPPAKVAK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.69897
Match: 2i13A
Description: No description for 2i13A was found.

Predicted Domain #2
Region A:
Residues: [109-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEIPSAPLGG VVPRPYGMVY PPQQVPGAVP ARPMYYPGPP MRHPAPVWQM PPPRPQQWYP  60
   61 QNPALSVPPA AHLGYRPQPL FPVQNMGMTP TPTSAPAIQP SPVTGVTPPG IPTSSPAMPV 120
  121 PQPLFPVVNN SIPSQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 1m2vB
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [244-367]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APPFSAPLPV GGAQQPSHAD ALGSADAYPP NNSIPGGTNA HSYASGPNTS GPSIGPPPVI  60
   61 ANKAPSNQPN EVYLVWDDEA MSMEERRMSL PKYKVHDETS QMNSINAAID RRISESRLAG 120
  121 RMAF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.14
Match: 1pk8A
Description: Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle