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View Structure Prediction Details

Protein: CDS4_ARATH
Organism: Arabidopsis thaliana
Length: 391 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDS4_ARATH.

Description E-value Query
Range
Subject
Range
gi|4895237, gi|2... - gi|4895237|gb|AAD32822.1|AC007659_4 putative phosphatidate cytidylyltransferase [Arabidopsis thalian...
339.0 [0..1] [391..40]

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Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFAELVLS TSRCTCPCRS FTRKPLIRPP LSGLRLPGDT KPLFRSGLGR ISVSRRFLTA  60
   61 VARAESDQLG DDDHSKGIDR IHNLQNVEDK QKKASQLKKR VIFGIGIGLP VGCVVLAGGW 120
  121 VFTVALASSV FIGSREYFEL VRSRGIAKGM TPPPRYVSRV C

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [162-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVICALMPIL TLYFGNIDIL VTSAAFVVAI ALLVQRGSPR FAQLSSTMFG LFYCGYLPSF  60
   61 WVKLRCGLAA PALNTGIGRT WPILLGGQA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [251-391]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HWTVGLVATL ISFSGVIATD TFAFLGGKTF GRTPLTSISP KKTWEGTIVG LVGCIAITIL  60
   61 LSKYLSWPQS LFSSVAFGFL NFFGSVFGDL TESMIKRDAG VKDSGSLIPG HGGILDRVDS 120
  121 YIFTGALAYS FIKTSLKLYG V

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle