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View Structure Prediction Details

Protein: Y3210_ARATH
Organism: Arabidopsis thaliana
Length: 506 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y3210_ARATH.

Description E-value Query
Range
Subject
Range
gi|50940811, gi|... - gi|50940811|ref|XP_479933.1| putative non-phototropic hypocotyl 3 (NPH3)/phototropic response protei...
459.0 [0..2] [506..24]
gi|241941352, gi... - gi|242080467|ref|XP_002445002.1| hypothetical protein SORBIDRAFT_07g002590 [Sorghum bicolor], gi|241...
457.0 [0..2] [506..24]
gi|102139797 - gi|102139797|gb|ABF69982.1| nonphototropic hypocotyl 3 (NPH3) family protein [Musa acuminata]
456.0 [0..2] [500..69]
gi|25336228, gi|... - gi|6634762|gb|AAF19742.1|AC009917_1 Contains a bZIP transcription factor PF|00170 domain. ESTs gb|R...
442.0 [0..2] [499..21]
gi|92896715 - gi|92896715|gb|ABE93313.1| BTB/POZ; NPH3 [Medicago truncatula]
417.0 [0..2] [494..24]

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Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEACCSDLEV DINGEQTIFL NKQIICAYSG TLRKLLGKST SSSGNLKVIF NDFPGGAESF  60
   61 EFVSRFCYND GRVAVMPSNV VFLHCAAKFM EVTKVLEQTE KCMEEIRYWA WPEVLLCLKQ 120
  121 CQEVETSPEV DSLAAKLMDA LVEKLCLT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.045757
Match: 2nn2A
Description: No description for 2nn2A was found.

Predicted Domain #2
Region A:
Residues: [149-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEMSPSSAGS ACSPDSSLFR FSCDSKSTES FKNCSVRLTW WFDEVLVLSS GLVEMFLKLM  60
   61 VLRKFDNLII SRFLFYYQKV KFCSASSHEK RKILETIIDT LCVLDR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.875 N/A N/A a.60.9 lambda integrase-like, N-terminal domain
View Download 0.875 N/A N/A a.60.9 lambda integrase-like, N-terminal domain
View Download 0.829 N/A N/A f.1.4 Bcl-2 inhibitors of programmed cell death
View Download 0.829 N/A N/A f.1.4 Bcl-2 inhibitors of programmed cell death
View Download 0.819 N/A N/A a.118.1 ARM repeat
View Download 0.782 N/A N/A a.118.9 ENTH/VHS domain
View Download 0.782 N/A N/A a.118.9 ENTH/VHS domain
View Download 0.780 N/A N/A a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.780 N/A N/A a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.672 N/A N/A a.118.11 Cytochrome c oxidase subunit E

Predicted Domain #3
Region A:
Residues: [255-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SCVPCKSLFA VLRLALGLNI NKSCMNKLEV MIGHQLDQAT LDNLLVPSPS KSSH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.838 N/A N/A a.8.1 Bacterial immunoglobulin/albumin-binding domains
View Download 0.798 N/A N/A a.5.1 DNA helicase RuvA subunit, C-terminal domain
View Download 0.798 N/A N/A a.5.1 DNA helicase RuvA subunit, C-terminal domain
View Download 0.787 N/A N/A a.5.1 DNA helicase RuvA subunit, C-terminal domain
View Download 0.787 N/A N/A a.5.1 DNA helicase RuvA subunit, C-terminal domain
View Download 0.768 N/A N/A a.8.1 Bacterial immunoglobulin/albumin-binding domains
View Download 0.750 N/A N/A a.7.17 Description not found.
View Download 0.699 N/A N/A a.8.1 Bacterial immunoglobulin/albumin-binding domains
View Download 0.663 N/A N/A a.65.1 Annexin

Predicted Domain #4
Region A:
Residues: [309-506]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYYVNLVLRF TKAFLDGARS GLQLKKVSSL IDQYIAEVAP DPCLKPSKFL SLITLVPDSA  60
   61 RESHEDIYRA IDMYLEAHTG TTDGEKLNLI RTLSYEKLSG ESRAHISRNQ KFQAIETLDE 120
  121 QQQQQQQQQQ QKQLILRMEK VETSGENEKL KEHIEGIQWR VMELERACLK MQNQMEVIKK 180
  181 RSKSSSKGSN RSLPKLCS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle