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View Structure Prediction Details

Protein: gi|14532598, gi|...
Organism: Arabidopsis thaliana
Length: 703 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14532598, gi|....

Description E-value Query
Range
Subject
Range
gi|12597786 - gi|12597786|gb|AAG60098.1|AC073178_9 disease resistance protein, putative [Arabidopsis thaliana]
440.0 [0..3] [700..1]

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Predicted Domain #1
Region A:
Residues: [1-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMDSSFFLT IVAAAFAIGF FIFLRKLRIH QENEDVGSSS TSPPSSLASS TSPPSTLSSS  60
   61 TSHPSSSTSP PSSLSCTGTH HVFPSFRGDD VRRNFLSHIQ KEFRRKGITP FIDNEIRRGE 120
  121 SIGPELIKAI RESKIAIVLL SRNYASSKWC LEELVEIMKC KKEFGLTVFA IFYEVDPSHV 180
  181 KKLTGEFGAV FQKTCKGRTK ENIMRWRQAF EEVATIAGYD SRNWE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.42
Match: 1fyvA
Description: Toll-like receptor 1, TLR1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.166909062418251 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [226-703]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEAAMIEEIA IEISKRLINS SPFSGFEGLI GMKAHIEKMK QLLCLDSTDE RRTVGISGPS  60
   61 GIGKSTIARV LHNQISDGFQ MSVFMKFKPS YTRPICSDDH DVKLQLEQQF LAQLINQEDI 120
  121 KIHQLGTAQN FVMGKKVLIV LDGVDQLVQL LAMPKAVCLG PGSRIIITTQ DQQLLKAFQI 180
  181 KHIYNVDFPP DHEALQIFCI HAFGHDSPDD GFEKLATKVT RLAGNLPLGL RVMGSHFRGM 240
  241 SKEDWKGELP RLRIRLDGEI GSILKFSYDV LDDEDKDLFL HIACFFNDEG IDHTFEDTLR 300
  301 HKFSNVQRGL QVLVQRSLIS EDLTQPMHNL LVQLGREIVR NQSVYEPGKR QFLVDGKEIC 360
  361 EVLTSHTGSE SVIGINFEVY WSMDELNISD RVFEGMSNLQ FFRFDENSYG RLHLPQGLNY 420
  421 LPPKLRILHW DYYPMTSLPS KFNLKFLVKI ILKHSELEKL WEGIQVSIYH SFMKFILF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.221849
Match: 1z6tA
Description: Structure of the apoptotic protease-activating factor 1 bound to ADP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle