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View Structure Prediction Details

Protein: U496H_ARATH
Organism: Arabidopsis thaliana
Length: 412 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for U496H_ARATH.

Description E-value Query
Range
Subject
Range
U496G_ARATH - UPF0496 protein At5g66670 OS=Arabidopsis thaliana GN=At5g66670 PE=2 SV=1
444.0 [0..1] [410..2]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLGMFSKTM EDKSNSSRNR TNNTPLPQQI RTDMGSLYSA DLTAYNSACR EDPDLQSFDS  60
   61 SLHQRTNRVI NSLASGAQTR SLSFDALIEV SGCLLEMN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [99-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEVVRFIIES KEDVWDNKDL TCLVNAYFDS SIKTLDFCNA VDNCVKRARI GQMLLQFALK  60
   61 QFEMESSGSN KSVEPGT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [176-412]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKYAKTLEEL NKFKASGDPF DGDFFMLLES VYEQQVMLLE ILHKQKRKLD KKLKNIKYWK  60
   61 KISNVVFVTA FVSVLIFSVV AAAVAAPPVV TALAAALAVP IGSIGKWCNH LWKKYETAVK 120
  121 GQKDIVLSMR IGAYVTMKDM DNIRVHVDKL KIEMESMMQK VDFALKEKEE EVAVRLSMHE 180
  181 ISKKFDVFTE RIEEVGDNAT KCSKNITLAR TIVLRHILSF PSSSDSGQGN LIEAITL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle