YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|226903081, gi...
Organism:	Escherichia sp. 3_2_53FAA
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|226903081, gi....

Description	E-value	Query Range	Subject Range
gi\|26111203, gi\|... - gi\|26250772\|ref\|NP_756812.1\| hypothetical protein c4958 [Escherichia coli CFT073], gi\|26111203\|gb\|AA...	382.0	[0..1]	[233..1]
gi\|157069150, gi... - gi\|157163470\|ref\|YP_001460788.1\| hypothetical protein EcHS_A4235 [Escherichia coli HS], gi\|157069150... gi\|218372622, gi... - gi\|218702636\|ref\|YP_002410265.1\| hypothetical protein ECIAI39_4391 [Escherichia coli IAI39], gi\|2183... gi\|218707620, gi... - gi\|218707620\|ref\|YP_002415139.1\| hypothetical protein ECUMN_4525 [Escherichia coli UMN026], gi\|21843... gi\|56384055, gi\|... - gi\|56480504\|ref\|NP_709795.2\| hypothetical protein SF4073 [Shigella flexneri 2a str. 301], gi\|5638405... gi\|218692282, gi... - gi\|218692282\|ref\|YP_002400494.1\| hypothetical protein ECED1_4708 [Escherichia coli ED1a], gi\|2184298... gi\|242379532, gi... - gi\|251787259\|ref\|YP_003001563.1\| hypothetical protein B21_03831 [Escherichia coli BL21], gi\|24237953... gi\|81242971, gi\|... - gi\|82778823\|ref\|YP_405172.1\| hypothetical protein SDY_3725 [Shigella dysenteriae Sd197], gi\|81242971... gi\|218354441, gi... - gi\|218697709\|ref\|YP_002405376.1\| hypothetical protein EC55989_4486 [Escherichia coli 55989], gi\|2183... gi\|218363325, gi... - gi\|218556556\|ref\|YP_002389470.1\| hypothetical protein ECIAI1_4216 [Escherichia coli IAI1], gi\|218363... gi\|218367836, gi... - gi\|218561067\|ref\|YP_002393980.1\| hypothetical protein ECS88_4462 [Escherichia coli S88], gi\|21836783... gi\|209914739, gi... - gi\|209921480\|ref\|YP_002295564.1\| hypothetical protein ECSE_4289 [Escherichia coli SE11], gi\|20991473... gi\|215267405, gi... - gi\|215489333\|ref\|YP_002331764.1\| hypothetical protein E2348C_4308 [Escherichia coli O127:H6 str. E23... gi\|209751668, gi... - gi\|209751674\|gb\|ACI74144.1\| hypothetical protein ECs4924 [Escherichia coli], gi\|209751668\|gb\|ACI7414... gi\|30064717, gi\|... - gi\|30064717\|ref\|NP_838888.1\| hypothetical protein S3662 [Shigella flexneri 2a str. 2457T], gi\|300429... gi\|253975844, gi... - gi\|254163943\|ref\|YP_003047051.1\| hypothetical protein ECB_03878 [Escherichia coli B str. REL606], gi... gi\|188494115, gi... - gi\|188494115\|ref\|ZP_03001385.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848931... gi\|253326413, gi... - gi\|254290693\|ref\|YP_003056441.1\| hypothetical protein ECD_03878 [Escherichia coli BL21(DE3)], gi\|253... gi\|157156532, gi... - gi\|157156532\|ref\|YP_001465496.1\| hypothetical protein EcE24377A_4544 [Escherichia coli E24377A], gi\|...	377.0	[0..3]	[233..1]
EG11917 - DUF1481 family putative lipoprotein / DUF1481 family probable lipoprotein, function unknown gi\|238860562, gi... - gi\|238903058\|ref\|YP_002928854.1\| hypothetical protein BWG_3661 [Escherichia coli BW2952], gi\|2388605... gi\|187732728, gi... - gi\|187732728\|ref\|YP_001882687.1\| hypothetical protein SbBS512_E4492 [Shigella boydii CDC 3083-94], g... gi\|170083462, gi... - gi\|170083462\|ref\|YP_001732782.1\| hypothetical protein ECDH10B_4190 [Escherichia coli str. K-12 subst... YJAH_ECOLI - Hypothetical protein yjaH - Escherichia coli gi\|89110037, gi\|... - gi\|89110037\|ref\|AP_003817.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG11917 - DUF1481 family putative lipoprotein / DUF1481 family probable lipoprotein, function unknown gi\|73857972, gi\|... - gi\|74314495\|ref\|YP_312914.1\| hypothetical protein SSON_4174 [Shigella sonnei Ss046], gi\|73857972\|gb\|... gi\|81247754, gi\|... - gi\|82546343\|ref\|YP_410290.1\| hypothetical protein SBO_4022 [Shigella boydii Sb227], gi\|81247754\|gb\|A...	376.0	[0..3]	[233..1]
gi\|209751672, gi... - pir\|\|D91244 hypothetical protein ECs4924 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|15834178, gi\|... - gi\|15834178\|ref\|NP_312951.1\| hypothetical protein ECs4924 [Escherichia coli O157:H7], gi\|13364400\|db... gi\|15834178, gi\|... - gi\|15834178\|ref\|NP_312951.1\| hypothetical protein ECs4924 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254795999, gi... - gi\|254795999\|ref\|YP_003080836.1\| hypothetical protein ECSP_5071 [Escherichia coli O157:H7 str. TW143...	375.0	[0..3]	[233..1]
gi\|12518930, gi\|... - gi\|15804592\|ref\|NP_290633.1\| hypothetical protein Z5577 [Escherichia coli O157:H7 EDL933], gi\|125189... gi\|25332704 - pir\|\|B86092 hypothetical protein yjaH [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	374.0	[0..3]	[233..1]
gi\|213051533 - gi\|213051533\|ref\|ZP_03344411.1\| hypothetical protein Salmoneentericaenterica_00500 [Salmonella enter... gi\|25332708, gi\|... - gi\|25332708\|pir\|\|AG0931 conserved hypothetical protein STY3714 [imported] - Salmonella enterica subs... gi\|214001636 - gi\|214001636\|ref\|ZP_03412371.1\| hypothetical protein Salmonellentericaenterica_14727 [Salmonella ent... gi\|213647191 - gi\|213647191\|ref\|ZP_03377244.1\| hypothetical protein SentesTy_07750 [Salmonella enterica subsp. ente... gi\|29139409, gi\|... - gi\|29143774\|ref\|NP_807116.1\| hypothetical protein t3460 [Salmonella enterica subsp. enterica serovar... gi\|213609701 - gi\|213609701\|ref\|ZP_03369527.1\| hypothetical protein SentesTyp_03900 [Salmonella enterica subsp. ent... gi\|16762286 - gi\|16762286\|ref\|NP_457903.1\| hypothetical protein STY3714 [Salmonella enterica subsp. enterica serov... gi\|213586805 - gi\|213586805\|ref\|ZP_03368631.1\| hypothetical protein SentesTyph_38230 [Salmonella enterica subsp. en...	372.0	[0..3]	[233..1]
gi\|62130255, gi\|... - gi\|62182622\|ref\|YP_219039.1\| hypothetical protein SC4052 [Salmonella enterica subsp. enterica serova... gi\|224585711, gi... - gi\|224585711\|ref\|YP_002639510.1\| hypothetical protein SPC_4002 [Salmonella enterica subsp. enterica ...	369.0	[0..3]	[233..1]
gi\|6960344, gi\|1... - gi\|6960344\|gb\|AAF33504.1\| 74% identity over 170 of 231 amino acids with E. coli hypothetical 26.3 kD... gi\|167994973, gi... - gi\|205327249\|gb\|EDZ14013.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=yjaH] [protein=putative inner membrane protein] [protein_id=YP_005240453.1] [location=4400574....	367.0	[0..3]	[233..1]
gi\|56130254, gi\|... - gi\|56415997\|ref\|YP_153072.1\| hypothetical protein SPA4008 [Salmonella enterica subsp. enterica serov... gi\|194404958, gi... - gi\|194446295\|ref\|YP_002043419.1\| hypothetical protein SNSL254_A4504 [Salmonella enterica subsp. ente... gi\|168467897, gi... - gi\|195629013\|gb\|EDX48405.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161617310, gi... - gi\|161617310\|ref\|YP_001591275.1\| hypothetical protein SPAB_05161 [Salmonella enterica subsp. enteric...	366.0	[0..3]	[233..1]
gi\|110617399, gi... - gi\|110807851\|ref\|YP_691371.1\| hypothetical protein SFV_4073 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|194421284, gi... - gi\|83584831\|ref\|ZP_00923491.1\| hypothetical protein Ecol1_01003971 [Escherichia coli 101-1], gi\|1944... gi\|194434770, gi... - gi\|83569019\|ref\|ZP_00920482.1\| hypothetical protein Sdys1_01002746 [Shigella dysenteriae 1012], gi\|1... gi\|189405431, gi... - gi\|189405431\|ref\|ZP_02815368.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]... gi\|170021996, gi... - gi\|170021996\|ref\|YP_001726950.1\| hypothetical protein EcolC_4024 [Escherichia coli ATCC 8739], gi\|16... gi\|170520247, gi... - gi\|170682529\|ref\|YP_001746385.1\| hypothetical protein EcSMS35_4449 [Escherichia coli SMS-3-5], gi\|17... gi\|75514768 - gi\|75514768\|ref\|ZP_00736997.1\| hypothetical protein Ecol5_01001177 [Escherichia coli 53638] gi\|124531387, gi... - gi\|124531387\|ref\|ZP_01701697.1\| protein of unknown function DUF1481 [Escherichia coli B], gi\|1244986... gi\|75255498, gi\|... - gi\|75255498\|ref\|ZP_00727297.1\| hypothetical protein EcolE2_01004460 [Escherichia coli E22], gi\|19306... gi\|227837543, gi... - gi\|227885469\|ref\|ZP_04003274.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783754... gi\|75208799, gi\|... - gi\|75208799\|ref\|ZP_00709085.1\| hypothetical protein EcolB_01004006 [Escherichia coli B171], gi\|19442... gi\|75197865 - gi\|75197865\|ref\|ZP_00707935.1\| hypothetical protein EcolH_01003702 [Escherichia coli HS] gi\|75188731 - gi\|75188731\|ref\|ZP_00701998.1\| hypothetical protein EcolE_01002002 [Escherichia coli E24377A]	346.0	[0..23]	[233..1]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVNSFNEGV VSPLLSFWRR SLMLAGALFL TACSHNSSLP PFTASGFAED QGAVRIWRKD  60
   61 SGDNVHLLAV FSPWRSGDTT TREYRWQGDN LTLININVYS KPPVNIRARF DDRGDLSFMQ 120
  121 RESDGEKQQL SNDQIDLYRY RADQIRQISD ALRQGRVVLR QGRWHAMEQT VTTCEGQTIK 180
  181 PDLDSQAIAH IERRQSRSSV DVSVAWLEAP EGSQLLLVAN SDFCRWQPNE KTF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.11
Match:	1vrmA
Description:	Crystal structure of hypothetical protein (TM1553) from THERMOTOGA MARITIMA at 1.58 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits