YRC Public Data Repository - Protein Structure Prediction

Protein:	CLPT2_ARATH
Organism:	Arabidopsis thaliana
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPT2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|71671743, gi\|... - gi\|71674767\|ref\|ZP_00672513.1\| TPR repeat:Clp, N terminal [Trichodesmium erythraeum IMS101], gi\|7167...	179.0	[0..22]	[231..80]
gi\|154245846, gi... - gi\|89360542\|ref\|ZP_01198360.1\| ATPas [Xanthobacter autotrophicus Py2], gi\|89350538\|gb\|EAS15821.1\| AT...	157.0	[0..89]	[240..1]
gi\|52307890, gi\|... - gi\|52425838\|ref\|YP_088975.1\| ClpA protein [Mannheimia succiniciproducens MBEL55E], gi\|52307890\|gb\|AA...	157.0	[0..89]	[241..1]
gi\|114307763, gi... - gi\|71550106\|ref\|ZP_00670254.1\| AAA ATPase, central region:Clp, N terminal [Nitrosomonas eutropha C71...	156.0	[0..89]	[240..1]
gi\|67860742, gi\|... - gi\|67931988\|ref\|ZP_00525140.1\| AAA ATPase, central region:Clp, N terminal [Solibacter usitatus Ellin...	155.0	[0..89]	[241..1]
gi\|238713243, gi... - gi\|77956726\|ref\|ZP_00820808.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Yersin...	154.0	[0..89]	[241..1]
gi\|91227643, gi\|... - gi\|91227643\|ref\|ZP_01261920.1\| ClpB protein [Vibrio alginolyticus 12G01], gi\|91188422\|gb\|EAS74716.1\|...	154.0	[0..89]	[240..1]
gi\|21957649, gi\|... - gi\|22124822\|ref\|NP_668245.1\| protein disaggregation chaperone [Yersinia pestis KIM], gi\|21957649\|gb\|... gi\|45435364, gi\|... - gi\|45440507\|ref\|NP_992046.1\| protein disaggregation chaperone [Yersinia pestis biovar Microtus str. ...	154.0	[0..83]	[241..2]
CLPB_NITEU - Chaperone protein ClpB OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=clpB PE=3 SV=1 CLPB_NITEU - Chaperone protein ClpB OS=Nitrosomonas europaea GN=clpB PE=3 SV=1	154.0	[0..89]	[240..1]
CLPB_VIBVU - Chaperone protein ClpB OS=Vibrio vulnificus (strain CMCP6) GN=clpB PE=3 SV=1 CLPB_VIBVU - Chaperone protein ClpB OS=Vibrio vulnificus GN=clpB PE=3 SV=1	154.0	[0..89]	[241..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAHSSCNFA LTNPIISQID SFSKKKLSVP LYFFSTRKAL TNPWLGVVDS SLSLTSPVSA  60
   61 LQTNRPRRIH KSAISSLPTA NPDLVVSD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKKPKWSWRA IKSFAMGELE ARKLKYPNTG TEALLMGILI EGTSFTSKFL RANKIMLYKV  60
   61 REETVKLLGK ADMYFFSPEH PPLTEDAQRA LDSALDQNLK AGGIGEVMPA HILLGIWSEV 120
  121 ESPGHKILAT LGFTDEKSKE LESFASESGF LDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.221849
Match:	1khyA
Description:	Heat shock protein F84.1 (ClpB) N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits